The potential function of microRNAs (miRNAs) in sepsis has captured the attention of researchers.
Short, non-coding RNAs known as miRNAs, which usually range from 18-24 nucleotides, govern gene activation by preventing the target mRNA from being translated or prioritizing complementary mRNA for premature disintegration. Several biomarkers have been presented as potential candidates for sepsis diagnosis, prognosis, and therapy guidance. MicroRNAs (miRNAs) are among the biomarkers that have been developed to enable early detection of sepsis, which facilitates the prompt application of supportive measures.
Through thorough sepsis analysis, screening differential genes, constructing gene networks, identifying prospective critical molecular targets, and acquiring early diagnostic indicators of sepsis, it is feasible to give new knowledge of sepsis etiology and treatment suggestions. In this work, we sought to investigate the hub mRNAs and miRNAs associated with sepsis, build a protein interaction network, and identify critical molecular targets using TargetScan, miRDB, miRTarbase, and DIANA. To test for differentially expressed miRNAs (DEMs) associated with sepsis, we downloaded four microarray datasets: GSE101639, GSE174507, and GSE134358 as miRNA dataset and GSE69063 as mRNA dataset from the Gene Expression Omnibus (GEO).
This study predicted four differentially expressed overlapping miRNAs (miR-5010-3p, miR-4446-5pm, miR-491-3p, miR-4730) in two datasets with a series of associated regulatory genes in three sepsis datasets, which may have an impact on the pathophysiology of sepsis. In the comparison and evaluation of miRNA target prediction tools for target genes by four selected miRNAs, the findings show that miR-491-3p had eight common genes, miR-4446-5p had 13 common genes, miR-4730 had no common genes, and miR-5010-3p had 30 common genes. It seems that if the results of the tools have a significant difference for a target variable, choosing joint results is a more appropriate option for final data analysis. These genes and miRNAs identified may contribute to developing early diagnostic tools and better therapeutic and prognostic options. However, laboratory analyses are still pending to confirm the role played by these molecules in sepsis. The comparative analysis of enriched results obtained from the tool outputs provides a preliminary understanding of the similarities in sepsis pathogenesis.