his.sePublikationer
Ändra sökning
Avgränsa sökresultatet
1234567 101 - 150 av 535
RefereraExporteraLänk till träfflistan
Permanent länk
Referera
Referensformat
  • apa
  • harvard1
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Annat format
Fler format
Språk
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Annat språk
Fler språk
Utmatningsformat
  • html
  • text
  • asciidoc
  • rtf
Träffar per sida
  • 5
  • 10
  • 20
  • 50
  • 100
  • 250
Sortering
  • Standard (Relevans)
  • Författare A-Ö
  • Författare Ö-A
  • Titel A-Ö
  • Titel Ö-A
  • Publikationstyp A-Ö
  • Publikationstyp Ö-A
  • Äldst först
  • Nyast först
  • Skapad (Äldst först)
  • Skapad (Nyast först)
  • Senast uppdaterad (Äldst först)
  • Senast uppdaterad (Nyast först)
  • Disputationsdatum (tidigaste först)
  • Disputationsdatum (senaste först)
  • Standard (Relevans)
  • Författare A-Ö
  • Författare Ö-A
  • Titel A-Ö
  • Titel Ö-A
  • Publikationstyp A-Ö
  • Publikationstyp Ö-A
  • Äldst först
  • Nyast först
  • Skapad (Äldst först)
  • Skapad (Nyast först)
  • Senast uppdaterad (Äldst först)
  • Senast uppdaterad (Nyast först)
  • Disputationsdatum (tidigaste först)
  • Disputationsdatum (senaste först)
Markera
Maxantalet träffar du kan exportera från sökgränssnittet är 250. Vid större uttag använd dig av utsökningar.
  • 101.
    Fagerlind, Magnus
    et al.
    Högskolan i Skövde, Forskningscentrum för Systembiologi. Högskolan i Skövde, Institutionen för biovetenskap.
    Stålhammar, Hans
    VikingGenetics, Skara.
    Olsson, Björn
    Högskolan i Skövde, Forskningscentrum för Systembiologi. Högskolan i Skövde, Institutionen för biovetenskap.
    Klinga-Levan, Karin
    Högskolan i Skövde, Forskningscentrum för Systembiologi. Högskolan i Skövde, Institutionen för biovetenskap.
    Expression of miRNAs in Bull Spermatozoa Correlates with Fertility Rates2015Ingår i: Reproduction in domestic animals, ISSN 0936-6768, E-ISSN 1439-0531, Vol. 50, nr 4, s. 587-594Artikel i tidskrift (Refereegranskat)
  • 102.
    Fasthén, Patrick
    Högskolan i Skövde, Institutionen för biovetenskap.
    The Virtual Self: Sensory-Motor Plasticity of Virtual Body-Ownership2014Självständigt arbete på avancerad nivå (magisterexamen), 20 poäng / 30 hpStudentuppsats (Examensarbete)
    Abstract [en]

    The distinction between the sense of body-ownership and the sense of agency has attracted considerable empirical and theoretical interest lately. However, the respective contributions of multisensory and sensorimotor integration to these two varieties of body experience are still the subject of ongoing research. In this study, I examine the various methodological problems encountered in the empirical study of body-ownership and agency with the use of novel immersive virtual environment technology to investigate the interplay between sensory and motor information. More specifically, the focus is on testing the relative contributions and possible interactions of visual-tactile and visual-motor contingencies implemented under the same experimental protocol. The effect of this is supported by physiological measurements obtained from skin conductance responses and heart rate. The findings outline a relatively simple method for identifying the necessary and sufficient conditions for the experience of body-ownership and agency, as studied with immersive virtual environment technology.

  • 103.
    Fatima, Zahida
    et al.
    Pakistan Agricultural Research Council, Islamabad, Pakistan.
    Athar Khan, Muhammad
    University of Lahore, Pakistan.
    Ahmad, Mansur-ud-Din
    Department of Epidemiology and Public Health, University of Veterinary and Animal Sciences, Lahore, Pakistan.
    Muhammad, Khushi
    Department of Microbiology, University of Veterinary and Animal Sciences, Lahore, Pakistan.
    Khwaja, Khalid Naeem
    Pakistan Agricultural Research Council, Islamabad, Pakistan.
    Khan, Amjad
    Department of Epidemiology and Public Health, University of Veterinary and Animal Sciences, Lahore, Pakistan.
    Anwar, Zubair
    Högskolan i Skövde, Institutionen för biovetenskap.
    Ahad, Abdul
    Department of Microbiology and Veterinary and Public Health, Chittagong Veterinary and Animal Sciences University, Bangladesh.
    Mahmood, Altaf
    Livestock and Dairy Development Department, Punjab, Pakistan.
    Cross Sectional Survey of Live Bird Markets and Zoo Birds for Circulating Influenza Subtypes in Pakistan2017Ingår i: Pakistan Veterinary Journal, ISSN 0253-8318, E-ISSN 2074-7764, Vol. 37, nr 2, s. 185-189Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    In Pakistan, avian influenza surveillance has been both active and passive. Here, we present the results of a survey effort focusing solely on the live bird markets and wild bird species from different zoos and national parks to understand the impact of live bird markets on the spread of highly pathogenic avian influenza viruses. A cross sectional survey was conducted from Jan-Dec 2011 to identify and isolate the circulating avian influenza virus subtypes in live bird markets and wild birds from different localities in and around Islamabad Capital Territory. Swabs, tracheal tissues and sera samples were collected, screened and diagnosed by hemagglutination inhibition assay and RT-PCR. The highest seropositivity was recorded for H9 (100%) followed by H5 (89.4%) and H7 (72.3%). All 27 isolates were of the low pathogenic H9N2 subtypes and no viruses could be successfully isolated of subtype H5N1 or H7N7. The higher prevalence of H5N1 (89.4%) observed in the present study was an alarming threat; therefore, we suggested immediate control strategies against this emerging risk of H5N1 for human in live bird markets in Pakistan. The factors unveiled in this study will help in understanding the lapses in controlling persistent outbreaks of avian influenza in country.

  • 104.
    Fehrenbach, Stefan
    Högskolan i Skövde, Institutionen för biovetenskap.
    A modular approach to identify differentially expressed genes between men and women for inflammatory diseases2016Självständigt arbete på avancerad nivå (magisterexamen), 20 poäng / 30 hpStudentuppsats (Examensarbete)
    Abstract [en]

    Inflammatory diseases show large differences in susceptibility between men and women. In previous study, genes that showed different expression patterns between patients and healthy controls in males and females were identified using modules in disease-gene interaction networks. In this work, genes were identified using different methods based on gene expressions in public available data sets. By counting the occurrences of genes identified in the interaction network in our results, we showed that they greatly overlap with genes identified by our methods and that the disease gene-interaction networks are able to identify genes that can be identified in a gene expression based analysis as well. Gene expression analysis was implemented in an automatic pipeline, which was designed for a general use. Thereby, future research with similar problems can be simplified. The Rpackages limma and WGCNA were used to identify genes that showed differences in males and females and GO terms and KEGG pathways were used to search for enriched functions of those genes. Further, a difference between males and females was found for systemic lupus erythematosus and Sjögren’s syndrome data sets in the expression of genes belonging to interferon signaling. Interferons are currently examined as drug targets for SLE and a difference between men and women could lead to different results of such a medication. However, the identified genes showed changes in expressions between patients and controls for both men and women. This supports a beneficial effect of such drugs in men and women.

  • 105.
    Feilhauer, Diana
    Högskolan i Skövde, Institutionen för biovetenskap.
    Measuring Emotions in Dreams: Methodological Challenges2015Självständigt arbete på grundnivå (kandidatexamen), 20 poäng / 30 hpStudentuppsats (Examensarbete)
    Abstract [en]

    Although emotions are a natural component of dream experiences, a lack of consensus prevails in research literature concerning the specific characteristics of emotional dream experiences. The aim of this study was to investigate if and to what extent this lack of convergence among studies stems from whether dream emotions are self- or externally rated - forty-four healthy participants (16 males and 28 females; mean age = 26.93, range = 19 - 40) kept a home dream diary for three consecutive weeks, and daily rated their emotional experiences in dreams with the Swedish modified Differential Emotions Scale (smDES; Fredrickson, 2013). Two external judges rated emotions in the same 552 home dream reports using the same scale. Results obtained with the two methods differed in that the self-ratings, compared to external ratings, revealed: (a) more emotional dreams; (b) more positive than negative emotions per dream (with the ratio being relatively balanced); (c) a relatively more balanced proportion of positive and negative emotions, while the external ratings revealed more negative than positive emotions per dream. The results suggest that this is mostly due to the underrepresentation of positive emotions with external ratings. Thus, the results continue to question the extent of convergence between self- and external ratings when investigating emotional dream contents, and bring to attention the importance of methodological aspects when investigating dream emotions.

  • 106.
    Fernandes, Ricardo A.
    et al.
    Radcliffe Department of Medicine, John Radcliffe Hospital, University of Oxford, United Kingdom / Medical Research Council Human Immunology Unit, John Radcliffe Hospital, University of Oxford, United Kingdom / Department of Molecular and Cellular Physiology, Department of Structural Biology, Stanford University, United States.
    Ganzinger, Kristina A.
    Department of Chemistry, University of Cambridge, United Kingdom / Living Matter Department, Physics of Cellular Interactions Group, AMOLF, Amsterdam, Netherlands.
    Tzou, Justin C.
    Department of Applied and Computational Mathematics and Statistics, University of Notre Dame, United States.
    Jönsson, Peter
    Department of Chemistry, University of Cambridge, United Kingdom / Department of Chemistry, Lund University, Sweden.
    Lee, Steven F.
    Department of Chemistry, University of Cambridge, United Kingdom.
    Palayret, Matthieu
    Department of Chemistry, University of Cambridge, United Kingdom.
    Santos, Ana Mafalda
    Radcliffe Department of Medicine, John Radcliffe Hospital, University of Oxford, United Kingdom / Medical Research Council Human Immunology Unit, John Radcliffe Hospital, University of Oxford, United Kingdom.
    Carr, Alexander R.
    Department of Chemistry, University of Cambridge, United Kingdom.
    Ponjavic, Aleks
    Department of Chemistry, University of Cambridge, United Kingdom.
    Chang, Veronica T.
    Radcliffe Department of Medicine, John Radcliffe Hospital, University of Oxford, United Kingdom / Medical Research Council Human Immunology Unit, John Radcliffe Hospital, University of Oxford, United Kingdom / Neurobiology Division, Medical Research Council Laboratory of Molecular Biology, Cambridge, United Kingdom.
    Macleod, Charlotte
    Department of Chemistry, University of Cambridge, United Kingdom.
    Lagerholm, B. Christoffer
    Radcliffe Department of Medicine, John Radcliffe Hospital, University of Oxford, United Kingdom.
    Lindsay, Alan E.
    Mathematics Department, University of British Columbia, Vancouver, Canada.
    Dushek, Omer
    Sir William Dunn School of Pathology, University of Oxford, United Kingdom / Wolfson Centre for Mathematical Biology, University of Oxford, United Kingdom.
    Tilevik, Andreas
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. School of Bioscience, University of Skövde, Sweden.
    Davis, Simon J.
    Radcliffe Department of Medicine, John Radcliffe Hospital, University of Oxford, United Kingdom / Medical Research Council Human Immunology Unit, John Radcliffe Hospital, University of Oxford, United Kingdom.
    Klenerman, David
    Department of Chemistry, University of Cambridge, United Kingdom.
    A cell topography-based mechanism for ligand discrimination by the T cell receptor2019Ingår i: Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, E-ISSN 1091-6490, Vol. 116, nr 28, s. 14002-14010Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    The T cell receptor (TCR) initiates the elimination of pathogens and tumors by T cells. To avoid damage to the host, the receptor must be capable of discriminating between wild-type and mutated self and nonself peptide ligands presented by host cells. Exactly how the TCR does this is unknown. In resting T cells, the TCR is largely unphosphorylated due to the dominance of phosphatases over the kinases expressed at the cell surface. However, when agonist peptides are presented to the TCR by major histocompatibility complex proteins expressed by antigen-presenting cells (APCs), very fast receptor triggering, i.e., TCR phosphorylation, occurs. Recent work suggests that this depends on the local exclusion of the phosphatases from regions of contact of the T cells with the APCs. Here, we developed and tested a quantitative treatment of receptor triggering reliant only on TCR dwell time in phosphatase-depleted cell contacts constrained in area by cell topography. Using the model and experimentally derived parameters, we found that ligand discrimination likely depends crucially on individual contacts being ∼200 nm in radius, matching the dimensions of the surface protrusions used by T cells to interrogate their targets. The model not only correctly predicted the relative signaling potencies of known agonists and nonagonists but also achieved this in the absence of kinetic proofreading. Our work provides a simple, quantitative, and predictive molecular framework for understanding why TCR triggering is so selective and fast and reveals that, for some receptors, cell topography likely influences signaling outcomes. 

  • 107.
    Fioretto, Paola
    et al.
    Department of Medicine, University of Padova, Padova, Italy.
    Del Prato, Stefano
    Department of Clinical & Experimental Medicine, University of Pisa, Pisa, Italy.
    Buse, John B.
    Department of Medicine, University of North Carolina School of Medicine, Chapel Hill, North Carolina, USA.
    Goldenberg, Ronald
    LMC Diabetes & Endocrinology, Thornhill, Canada.
    Giorgino, Francesco
    Department of Emergency and Organ Transplantation, University of Bari Aldo Moro, Bari, Italy.
    Reyner, Daniel
    AstraZeneca, Gaithersburg, Maryland, USA.
    Langkilde, Anna Maria
    AstraZeneca, Gothenburg, Sweden.
    Sjöstrom, C. David
    AstraZeneca, Gothenburg, Sweden.
    Sartipy, Peter
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. AstraZeneca, Gothenburg, Sweden.
    Efficacy and safety of dapagliflozin in patients with type 2 diabetes and moderate renal impairment (chronic kidney disease stage 3A): The DERIVE Study2018Ingår i: Diabetes, obesity and metabolism, ISSN 1462-8902, E-ISSN 1463-1326, Vol. 20, nr 11, s. 2532-2540Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    Aims: Dapagliflozin is a selective inhibitor of sodium glucose co-transporter 2 (SGLT2). This study assessed the efficacy and safety of dapagliflozin 10 mg vs placebo in patients with type 2 diabetes (T2D) and moderate renal impairment (estimated glomerular filtration rate [eGFR], 45-59 mL/min/1.73 m(2); chronic kidney disease [CKD] stage 3A). Materials and methods: In this double-blind, parallel group, Phase 3 study (NCT02413398, ) patients with inadequately controlled T2D (HbA1c 7.0%-11.0%) were randomized (1:1) to dapagliflozin 10 mg once daily (N = 160) or matching placebo (N = 161) for 24 weeks. Randomization was stratified by pre-enrolment glucose-lowering therapy. The primary endpoint was change from baseline in HbA1c at Week 24. Results: At Week 24, compared with placebo, dapagliflozin significantly decreased HbA1c (difference [95% CI], -0.34% [-0.53, -0.15]; P < 0.001), body weight (difference [95% CI], -1.25 kg [-1.90, -0.59]; P < 0.001), fasting plasma glucose (difference [95% CI], -0.9 mmol/L [-1.5, -0.4]; P = 0.001) and systolic blood pressure (difference [95% CI], -3.1 mmHg [-6.3, 0.0]; P < 0.05). Decreases from baseline in eGFR were greater with dapagliflozin than placebo at Week 24 (-2.49 mL/min/1.73 m(2) [-4.96, -0.02]), however, eGFR returned to baseline levels at Week 27 (3 weeks post-treatment) (0.61 mL/min/1.73 m(2) [-1.59, 2.81]). No increase in adverse events (AEs; 41.9% vs 47.8%) or serious AEs (5.6% vs 8.7%) were reported with dapagliflozin versus placebo. No AEs of bone fractures, amputations or DKA were reported. Conclusions: The findings of this study (NCT02413398, ) support the positive benefit/risk profile of dapagliflozin for the treatment of patients with T2D and CKD 3A.

  • 108.
    Fjordstig, Andréas
    Högskolan i Skövde, Institutionen för biovetenskap.
    Separating Post-perceptual Processes from Auditory Awareness: An Electrophysiological Study With a No-response Task2019Självständigt arbete på grundnivå (kandidatexamen), 180 hpStudentuppsats (Examensarbete)
    Abstract [en]

    Two theories of consciousness have different ideas about when consciousness happens and what neural processes enable conscious experience. The recurrent processing theory supports an early onset of consciousness caused by recurring loops of information between sensory areas. Contrary to this belief, the global workspace theory claims that consciousness appears later, through global recurrent loops of information between sensory and higher order brain areas such as the visual cortex and frontoparietal areas. Electrophysiological studies have found an event-related negativity arising in primary visual areas around 200 ms that correlates to awareness. This activity suits the predictions of an early onset of consciousness made by the recurrent processing theory. It is followed by a later positive amplitude appearing around 400 ms. This activity is in line with predictions made by the global workspace theory. The current study transition from visual to auditory awareness research in order to find the neural correlates of consciousness in audition. A sound detection task with tones calibrated to each participant’s threshold value was used in the experiment and two electrophysiological measurements of auditory awareness were found. An auditory awareness negativity that appears around 200 ms after stimulus onset and a late positivity appearing around 400 ms. Researchers disagree about if these event-related potentials correlate with awareness or unrelated cognitive mechanisms. In order to solve this problem, the current experiment was devised to test if they were affected by response conditions. A no-response paradigm with reversed response conditions was used to separate pre- and post-conscious mechanisms from the auditory awareness negativity and the late positivity. Results showed that auditory awareness negativity was independent of response condition and thus free from post-perceptual processes. The late positivity amplitude seems to be dependent on response condition but the result was inconclusive.

  • 109.
    Fjordstig, Andréas
    Högskolan i Skövde, Institutionen för biovetenskap.
    Separating Post-perceptual Processes From Auditory Awareness: An Electrophysiological Study With a No-response Task2019Självständigt arbete på grundnivå (kandidatexamen), 15 poäng / 22,5 hpStudentuppsats (Examensarbete)
    Abstract [en]

    Two theories of consciousness have different ideas about when consciousness happens and what neural processes enable conscious experience. The recurrent processing theory supports an early onset of consciousness caused by recurring loops of information between sensory areas. Contrary to this belief, the global workspace theory claims that consciousness appears later, through global recurrent loops of information between sensory and higher order brain areas such as the visual cortex and frontoparietal areas. Electrophysiological studies have found an event-related negativity arising in primary visual areas around 200 ms that correlates to awareness. This activity suits the predictions of an early onset of consciousness made by the recurrent processing theory. It is followed by a later positive amplitude appearing around 400 ms. This activity is in line with predictions made by the global workspace theory. The current study transition from visual to auditory awareness research in order to find the neural correlates of consciousness in audition. A sound detection task with tones calibrated to each participants threshold value was used in the experiment and two electrophysiological measurements of auditory awareness were found. An auditory awareness negativity that appears around 200 ms after stimulus onset and a late positivity appearing around 400 ms. Researchers disagree about if these event-related potentials correlate with awareness or unrelated cognitive mechanisms. In order to solve this problem, the current experiment was devised to test if they were affected by response conditions. A no-response paradigm with reversed response conditions was used to separate pre- and post-conscious mechanisms from the auditory awareness negativity and the late positivity. Results showed that auditory awareness negativity was independent of response condition and thus free from post-perceptual processes. The late positivity amplitude seems to be dependent on response condition but the result was inconclusive.

  • 110.
    Fors, John
    Högskolan i Skövde, Institutionen för biovetenskap.
    Effectiveness of reduced-dose efavirenz in hiv therapy considering patient adherence2012Självständigt arbete på grundnivå (kandidatexamen), 10 poäng / 15 hpStudentuppsats (Examensarbete)
    Abstract [en]

    Antiretroviral drugs have revolutionized HIV care and enabled better management of the infection thus allowing patients survive for many years. One proposed approach to increase access to such drugs in sub-Saharan Africa is to use of a reduced-dose alternative of the drug efavirenz, with 400 mg rather than regular 600 mg dose. This effectively would provide medication for 50 percent more persons with the same amount of active ingredient. However, antiretroviral drugs require high patient adherence to achieve intended therapeutic effect, and it is unclear if a reduced-dose therapy would have sufficient efficacy, and if it would lead to an increased risk of viral resistance.

    The time profile of drug plasma concentration and corresponding long-term viral load was estimated using integrated population PK/PD simulations, with model parameters based on selected research studies. The results suggest a reduced dose 400 mg, rather than 600 mg regular dose, efavirenz in HIV therapy would place strict demands on patients to maintain very high adherence levels, at least 80-90 percent, to maintain sufficient drug concentration in blood plasma, and to minimize risk of viral failure. However, it is relatively rare for HIV therapy programs in sub-Saharan Africa to consistently achieve such high adherence levels. In addition, if patients are co-administered rifampin, a drug widely used in TB care, this increases hepatic metabolism and plasma clearance rate, resulting in further reduced average drug plasma concentration. These findings suggest a reduced dose efavirenz treatment alternative may be most (only) relevant for patient categories expected to maintain high adherence; and in particular among persons who have been confirmed to have CYP2B6 genotype consistent with inherently lower drug metabolism. At usual adherence levels it is estimated a reduced dose alternative may increase the share of patients at risk of viral failure by 5 to 15 percent vs. regular dose of 600 mg.

  • 111.
    Freij, Mathilda
    Högskolan i Skövde, Institutionen för biovetenskap.
    Restaureringens roll gällande Hornborgasjöns förmåga till kväve- och fosforretention2014Självständigt arbete på grundnivå (kandidatexamen), 10 poäng / 15 hpStudentuppsats (Examensarbete)
    Abstract [sv]

    Idag är Hornborgasjön en av Europas viktigaste fågelsjöar men det har inte alltid varit så. Innan natur och kulturvårdsintressen värnades utdikades sjön till förmån för jordbruket och lämnades att växa igen. I början och mitten av 90-talet påbörjades och färdigställdes en omfattande restaurering av sjön som i kort innebar en höjning av vattenståndet och en ökad sjöareal.

     

    Under många år har man regelbundet testat vattenkvaliteten i Hornborgasjöns inlopp och utlopp. Rapporten syftar till att använda en del av dessa data till att undersöka sjöns retention av kväve och fosfor samt om denna förändrats i och med restaureringen. Detta gjordes med hjälp av medeldifferenserna av totalkväve och totalfosfor mellan in- och utlopp. Medeldifferenserna ger en indikation på om mindre halter försvinner ut ur sjön än som kommer in. På så sätt kan medeldifferenserna representera de halter som stannar kvar i sjön, som retenteras av sjön.

     

    Analysen visar att medeldifferenserna av totalkväve mellan in- och utlopp har ökat efter restaureringen. Vad gäller medeldifferenserna av totalfosfor däremot kan ingen skillnad visas vid de flesta av testerna och ett utav dem visar att medeldifferenserna av totalfosfor mellan in- och utlopp signifikant minskat. Dessa resultat indikerar att restaureringen av Hornborgasjön ökat dess retenterande förmåga vad gäller kväve men inte fosfor. Dock krävs mer omfattande studier med säkrare metoder för att kunna styrka dessa resultat.

  • 112.
    Frisk, Mikael
    et al.
    Department of Physics, Chemistry and Biology (IFM), Linköping University, Linköping, Sweden.
    Jonsson, Annie
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Sellman, Stefan
    Department of Physics, Chemistry and Biology (IFM), Linköping University, Linköping, Sweden.
    Flisberg, Patrik
    The Forestry Research Institute of Sweden, Uppsala, Sweden.
    Rönnqvist, Mikael
    Département de génie mécanique, Université Laval, Québec, Canada.
    Wennergren, Uno
    Department of Physics, Chemistry and Biology (IFM), Linköping University, Linköping, Sweden.
    Route optimization as an instrument to improve animal welfare and economics in pre-slaughter logistics2018Ingår i: PLoS ONE, ISSN 1932-6203, E-ISSN 1932-6203, Vol. 13, nr 3, artikel-id e0193223Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    Each year, more than three million animals are transported from farms to abattoirs in Sweden. Animal transport is related to economic and environmental costs and a negative impact on animal welfare. Time and the number of pick-up stops between farms and abattoirs are two key parameters for animal welfare. Both are highly dependent on efficient and qualitative transportation planning, which may be difficult if done manually. We have examined the benefits of using route optimization in cattle transportation planning. To simulate the effects of various planning time windows and transportation time regulations and number of pick-up stops along each route, we have used data that represent one year of cattle transport. Our optimization model is a development of a model used in forestry transport that solves a general pick-up and delivery vehicle routing problem. The objective is to minimize transportation costs. We have shown that the length of the planning time window has a significant impact on the animal transport time, the total driving time and the total distance driven; these parameters that will not only affect animal welfare but also affect the economy and environment in the pre-slaughter logistic chain. In addition, we have shown that changes in animal transportation regulations, such as minimizing the number of allowed pick-up stops on each route or minimizing animal transportation time, will have positive effects on animal welfare measured in transportation hours and number of pick-up stops. However, this leads to an increase in working time and driven distances, leading to higher transportation costs for the transport and negative environmental impact.

  • 113.
    Frost, Morgan
    Högskolan i Skövde, Institutionen för biovetenskap.
    Social perception in Autism: An eye tracking and pupillometric study2018Självständigt arbete på avancerad nivå (magisterexamen), 20 poäng / 30 hpStudentuppsats (Examensarbete)
    Abstract [en]

    Typically developing humans innately place subjective value on social information and orient attention to it. This can be shown through eye tracking and pupillometry, a method used to show attentional engagement. Social brain development and social preference is present from infancy, and is thought to rely on a carefully balanced network of neurotransmitters and neural connections. Autism Spectrum Disorder (ASD) presents altered neural systems which cause individuals to perceive and process social information differently, but the neurophysiology of this difference remains unclear. Previous research shows atypical gaze patterns, hyperarousal, and lack of orienting to social stimuli in ASD. Since autism is highly comorbid and shares traits with other neurodevelopmental disorders, it is difficult to distinguish aspects of these social processing differences. This study used a group of 35 neuropsychiatric patients to investigate how individuals with autism process social and non-social scenes. Eye tracking and pupillometry measures were collected while participants observed images of natural scenes with or without a person. Participants with autism did not show a pupillary response to social images and were slower to fixate on the face  region than the other participants. Additionally there were correlations between clinical measures of social functioning and the length of time it took to fixate to faces. The results highlight important distinctions of social processing in autism. This thesis proposes a new perspective of looking at the social deficits present in autism spectrum disorder. It suggests reframing the current discussion from two leading hypotheses to a unified approach and formally considering the limitations of differing types of stimuli.

  • 114.
    Frost, Morgan
    Högskolan i Skövde, Institutionen för biovetenskap. Gillberg Neuropsychiatry Centre.
    Social Perception in Autism: An eye-tracking and pupillometric study2018Självständigt arbete på avancerad nivå (magisterexamen), 20 poäng / 30 hpStudentuppsats (Examensarbete)
    Abstract [en]

    Typically developing humans innately place subjective value on social informa- tion and orient attention to it. This can be shown through eye tracking and pupillometry, a method used to show attentional engagement. Social brain de- velopment and social preference is present from infancy, and is thought to rely on a carefully balanced network of neurotransmitters and neural connections. Autism Spectrum Disorder (ASD) presents altered neural systems which cause individuals to perceive and process social information di↵erently, but the neuro- physiology of this di↵erence remains unclear. Previous research shows atypical gaze patterns, hyperarousal, and lack of orienting to social stimuli in ASD. Since autism is highly comorbid and shares traits with other neurodevelopmental dis- orders, it is dicult to distinguish aspects of these social processing di↵erences. This study used a group of 35 neuropsychiatric patients to investigate how in- dividuals with autism process social and non-social scenes. Eye tracking and pupillometry measures were collected while participants observed images of nat- ural scenes with or without a person. Participants with autism did not show a pupillary response to social images and were slower to fixate on the face re- gion than the other participants. Additionally there were correlations between clinical measures of social functioning and the length of time it took to fixate to faces. The results highlight important distinctions of social processing in autism. This thesis proposes a new perspective of looking at the social deficits present in autism spectrum disorder. It suggests reframing the current discus- sion from two leading hypotheses to a unified approach and formally considering the limitations of di↵ering types of stimuli.

  • 115.
    Frändén, Philip
    Högskolan i Skövde, Institutionen för biovetenskap.
    Neural Correlates of Heart Rate Variability: Threat and Safety Perception2018Självständigt arbete på grundnivå (kandidatexamen), 15 poäng / 22,5 hpStudentuppsats (Examensarbete)
    Abstract [en]

    The connection between the heart and the brain was coined 150 years ago by Claude Bernard and has since then been an interesting topic of research. Scientists have for many years searched for biomarkers of stress and health to map the current status of the organism. Heart rate variability (HRV) has been presented as an emerging objective and promising marker to achieve just this. HRV refers to the beat-to-beat variations in heart rate (HR) and is thought to be a useful signal in understanding and providing valuable information of the autonomic nervous system (ANS). HRV has also been proposed as a marker of stress and health by sharing neural correlates and functions with several executive functions. This thesis identified several regions, including the ventromedial prefrontal cortex and the amygdala, in which significant associations across several studies were found between threat and safety perception, emotional regulation and HRV. This suggest that HRV may function as an index of the brain mechanism and structures that guide and govern adaptive functions and thus, provide researchers with valuable information regarding the stress and health of an organism. Two major theoretical frameworks, which articulate and explain the role of HRV as an indicator of individuals ability to adapt to environmental changes and cope under stress is presented. HRV can also be used in practice in several ways and a growing and promising field of application is HRV biofeedback.

  • 116.
    Förster, Jona
    Högskolan i Skövde, Institutionen för biovetenskap.
    ERP and MEG Correlates of Visual Consciousness: An Update2019Självständigt arbete på avancerad nivå (magisterexamen), 20 poäng / 30 hpStudentuppsats (Examensarbete)
    Abstract [en]

    Two decades of event-related potential (ERP) research have established that the most consistent correlates of the onset of visual consciousness are the early visual awareness negativity (VAN), a negative component in the N2 time range over posterior electrode sites, and the late positivity (LP), a positive component in the P3 time range over fronto-parietal electrode sites. A review by Koivisto & Revonsuo (2010) had looked at 39 studies and concluded that the VAN is the earliest and most reliable correlate of visual phenomenal consciousness, whereas the LP probably reflects later processes associated with reflective/access consciousness. However, an “early” vs. “late” debate still persists. This thesis provides an update to that earlier review. All ERP and MEG studies that have appeared since 2010 and directly compared ERPs of aware and unaware conditions are considered. The result corroborates the view that VAN is the earliest and most consistent signature of visual phenomenal consciousness, and casts further doubt on the LP as an ERP correlate of consciousness. Important new methodological, empirical, and theoretical developments in the field are described, and the empirical results are related to the theoretical background debates.

  • 117.
    Garcia, Danilo
    et al.
    Blekinge Center of Competence, Blekinge County Council, Karlskrona, Sweden / Department of Psychology, University of Gothenburg, Gothenburg, Sweden / Network for Empowerment and Well-Being, Sweden.
    Persson, Björn
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Network for Empowerment and Well-Being, Sweden / Department of Psychology, University of Turku, Finland.
    Al Nima, Ali
    Blekinge Center of Competence, Blekinge County Council, Karlskrona, Sweden / Network for Empowerment and Well-Being, Sweden.
    Gruneau Brulin, Joel
    Department of Psychology, Stockholm University, Stockholm, Sweden.
    Rapp-Ricciardia, Max
    Blekinge Center of Competence, Blekinge County Council, Karlskrona, Sweden / Department of Psychology, University of Gothenburg, Gothenburg, Sweden / Network for Empowerment and Well-Being, Sweden.
    Kajonius, Petri J.
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Department of Psychology, University of Gothenburg, Gothenburg, Sweden / Network for Empowerment and Well-Being, Sweden / Department of Behavioral Sciences, University West, Sweden.
    IRT analyses of the Swedish Dark Triad Dirty Dozen2018Ingår i: Heliyon, ISSN 2405-8440, Vol. 4, nr 3, artikel-id e00569Artikel i tidskrift (Refereegranskat)
  • 118.
    Gerafi, Joel
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Long-term functional outcome after ischemic stroke: Prognostic value of early identification of neglect and aphasia2017Licentiatavhandling, sammanläggning (Övrigt vetenskapligt)
  • 119.
    Gerafi, Joel
    et al.
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Department of Psychology, Faculty of Social Sciences, University of Gothenburg, Gothenburg, Sweden / Institute of Neuroscience and Physiology,The Sahlgrenska Academy at University of Gothenburg, Gothenburg, Sweden / The Skaraborg Institute for Research and Development, Skövde, Sweden.
    Samuelsson, H.
    Department of Psychology, Faculty of Social Sciences, University of Gothenburg, Gothenburg, Sweden / Institute of Neuroscience and Physiology,The Sahlgrenska Academy at University of Gothenburg, Gothenburg, Sweden.
    Viken, J. I.
    Department of Psychology, Faculty of Social Sciences, University of Gothenburg, Gothenburg, Sweden / Institute of Neuroscience and Physiology,The Sahlgrenska Academy at University of Gothenburg, Gothenburg, Sweden.
    Blomgren, C.
    Institute of Neuroscience and Physiology,The Sahlgrenska Academy at University of Gothenburg, Gothenburg, Sweden.
    Claesson, L.
    Institute of Neuroscience and Physiology,The Sahlgrenska Academy at University of Gothenburg, Gothenburg, Sweden.
    Kallio, Sakari
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Jern, C.
    Institute of Biomedicine, The Sahlgrenska Academy at University of Gothenburg, Gothenburg, Sweden.
    Blomstrand, C.
    Institute of Neuroscience and Physiology,The Sahlgrenska Academy at University of Gothenburg, Gothenburg, Sweden.
    Jood, K.
    Institute of Neuroscience and Physiology,The Sahlgrenska Academy at University of Gothenburg, Gothenburg, Sweden / Department of Neurology, The Sahlgrenska University Hospital, Gothenburg, Sweden.
    Neglect and aphasia in the acute phase as predictors of functional outcome 7 years after ischemic stroke2017Ingår i: European Journal of Neurology, ISSN 1351-5101, E-ISSN 1468-1331, Vol. 24, nr 11, s. 1407-1415Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    Background and purpose: Visuospatial inattention (VSI) and languageimpairment (LI) are often present early after stroke and associations with an unfavorable short-term functional outcome have been reported. The purpose of this study was to investigate whether a screening of VSI and LI as indicators of cortical symptoms early after stroke could predict long-term functional outcomes. Methods: A consecutive cohort of 375 patients with ischemic stroke was assessed for the occurrence of VSI at a median of 7 days after admission (interquartile range, 1–5 days) using the Star Cancellation Test and for LI (within the first 7 days) with the language item in the Scandinavian StrokeScale. Seven years later, functional outcomes were assessed by the modified Rankin scale and Frenchay Activities Index in 235 survivors without recurrent stroke. Relationships between baseline predictors and functional outcome at 7 years were analyzed with bivariate correlations and multiple categorical regressions with optimal scaling. Results: The regression model significantly explained variance in the modified Rankin scale (R2= 0.435, P < 0.001) and identified VSI (P=0.001) and neurological deficits (P < 0.001; Scandinavian Stroke Scale score without the language item) as the significant independent predictors. The model for FrenchayActivities Index was also significant (R2= 0.269, P < 0.001) with VSI(P = 0.035) and neurological deficits (P < 0.001) as significant independent predictors. Conclusions: Visuospatial inattention at acute stroke has an independent impact on long-term functional outcomes. Early recognition may enable targeted rehabilitative interventions.

  • 120.
    Ghannoum, Salim
    Högskolan i Skövde, Institutionen för biovetenskap.
    Characterizing sub-populations of myxoid liposarcoma cells using a multi-algorithmic pipeline for analyzing single-cell RNA sequencing data2018Självständigt arbete på avancerad nivå (magisterexamen), 20 poäng / 30 hpStudentuppsats (Examensarbete)
    Abstract [en]

    All tumors are characterized by intratumor heterogeneity at varying degrees. Cancer stem cells have been put forward to be an essential element that promotes heterogeneity. Myxoid liposarcoma, which is a lipogenic cancer that develops in deep soft connective tissues, is characterized by intermediate intratumor heterogeneity. Despite recent therapeutic advances, the post-treatment recurrence rate remains relatively high. Identifying sub-populations of myxoid liposarcoma tumors can help in characterizing their molecular signatures and tumorigenic capabilities leading to developing better therapeutics. Single-cell transcriptomic approaches can highlight deviations in gene expression patterns among different subpopulations within the tumor. In this study, a multi-algorithmic pipeline was developed to make a fast, simple and efficient process for characterizing cellular sub-populations of cancer cells and gain insight about the molecular signature of the cancer stem sub-population. This pipeline consists of four successive steps, read counts’ pre-processing, cellular clustering and pseudotemporal ordering, defining differential expressed genes and defining biomarker genes. The results showed a harmonic integration between the algorithms that constitute the backbone of the proposed pipeline leading to a reduction in the limitations of some of these algorithms. The outcome of this study is a panel of 33 genes nominated as possible biomarkers for stemness and aggressiveness. To optimize and validate these biomarker candidates, further investigations are required. Moreover, additional functional coupling analysis is necessary to nominate biomarkers for each of the sub-populations based on the defined differential expressed genes.

  • 121.
    Ghosheh, Nidal
    et al.
    Högskolan i Skövde, Forskningscentrum för Systembiologi. Högskolan i Skövde, Institutionen för biovetenskap. Institute of Biomedicine, Department of Clinical Chemistry and Transfusion Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
    Küppers-Munther, Barbara
    Takara Bio Europe Aktiebolaget, Gothenburg, Sweden.
    Asplund, Annika
    Takara Bio Europe Aktiebolaget, Gothenburg, Sweden.
    Edsbagge, Josefina
    Takara Bio Europe Aktiebolaget, Gothenburg, Sweden.
    Ulfenborg, Benjamin
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Andersson, Tommy B.
    Cardiovascular and Metabolic Diseases, Innovative Medicines and Early Development Biotech Unit, AstraZeneca, Mölndal, Sweden / Department of Physiology and Pharmacology, Section of Pharmacogenetics, Karolinska Institutet, Stockholm, Sweden.
    Björquist, Petter
    NovaHep Aktiebolaget, Gothenburg, Sweden.
    Andersson, Christian X.
    Takara Bio Europe Aktiebolaget, Gothenburg, Sweden.
    Carén, Helena
    Sahlgrenska Cancer Center, Department of Pathology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
    Simonsson, Stina
    Institute of Biomedicine, Department of Clinical Chemistry and Transfusion Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
    Sartipy, Peter
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. AstraZeneca Research and Development, Global Medicines Development Cardiovascular and Metabolic Diseases Global Medicines Development Unit, Mölndal, Sweden.
    Synnergren, Jane
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Comparative transcriptomics of hepatic differentiation of human pluripotent stem cells and adult human liver tissue2017Ingår i: Physiological Genomics, ISSN 1094-8341, E-ISSN 1531-2267, Vol. 49, nr 8, s. 430-446Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    Hepatocytes derived from human pluripotent stem cells (hPSC-HEP) have the potential to replace presently used hepatocyte sources applied in liver disease treatment and models of drug discovery and development. Established hepatocyte differentiation protocols are effective and generate hepatocytes, which recapitulate some key features of their in vivo counterparts. However, generating mature hPSC-HEP remains a challenge. In this study, we applied transcriptomics to investigate the progress of in vitro hepatic differentiation of hPSCs at the developmental stages, definitive endoderm, hepatoblasts, early hPSC-HEP, and mature hPSC-HEP, to identify functional targets that enhance efficient hepatocyte differentiation. Using functional annotation, pathway and protein interaction network analyses, we observed the grouping of differentially expressed genes in specific clusters representing typical developmental stages of hepatic differentiation. In addition, we identified hub proteins and modules that were involved in the cell cycle process at early differentiation stages. We also identified hub proteins that differed in expression levels between hPSC-HEP and the liver tissue controls. Moreover, we identified a module of genes that were expressed at higher levels in the liver tissue samples than in the hPSC-HEP. Considering that hub proteins and modules generally are essential and have important roles in the protein-protein interactions, further investigation of these genes and their regulators may contribute to a better understanding of the differentiation process. This may suggest novel target pathways and molecules for improvement of hPSC-HEP functionality, having the potential to finally bring this technology to a wider use.

  • 122.
    Ghosheh, Nidal
    et al.
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Institute of Biomedicine, Department of Clinical Chemistry and Transfusion Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
    Olsson, Björn
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Edsbagge, Josefina
    Takara Bio Europe AB, Gothenburg, Sweden.
    Küppers-Munther, Barbara
    Takara Bio Europe AB, Gothenburg, Sweden.
    Van Giezen, Mariska
    Takara Bio Europe AB, Gothenburg, Sweden.
    Asplund, Annika
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Andersson, Tommy B.
    AstraZeneca R&D, CVMD DMPK, Mölndal, Sweden / Department of Physiology and Pharmacology, Section of Pharmacogenetics, Karolinska Institutet, Stockholm, Sweden.
    Björquist, Petter
    NovaHep AB, Gothenburg, Sweden.
    Carén, Helena
    Sahlgrenska Cancer Center, Department of Pathology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
    Simonsson, Stina
    Institute of Biomedicine, Department of Clinical Chemistry and Transfusion Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
    Sartipy, Peter
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. AstraZeneca R&D, GMD CVMD GMed, Mölndal, Sweden.
    Synnergren, Jane
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Highly Synchronized Expression of Lineage-Specific Genes during In Vitro Hepatic Differentiation of Human Pluripotent Stem Cell Lines2016Ingår i: Stem Cells International, ISSN 1687-9678, Vol. 2016, artikel-id 8648356Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    Human pluripotent stem cells- (hPSCs-) derived hepatocytes have the potential to replace many hepatic models in drug discovery and provide a cell source for regenerative medicine applications. However, the generation of fully functional hPSC-derived hepatocytes is still a challenge. Towards gaining better understanding of the differentiation and maturation process, we employed a standardized protocol to differentiate six hPSC lines into hepatocytes and investigated the synchronicity of the hPSC lines by applying RT-qPCR to assess the expression of lineage-specific genes (OCT4, NANOG, T, SOX17, CXCR4, CER1, HHEX, TBX3, PROX1, HNF6, AFP, HNF4a, KRT18, ALB, AAT, and CYP3A4) which serve as markers for different stages during liver development. The data was evaluated using correlation and clustering analysis, demonstrating that the expression of these markers is highly synchronized and correlated well across all cell lines. The analysis also revealed a distribution of the markers in groups reflecting the developmental stages of hepatocytes. Functional analysis of the differentiated cells further confirmed their hepatic phenotype. Taken together, these results demonstrate, on the molecular level, the highly synchronized differentiation pattern across multiple hPSC lines. Moreover, this study provides additional understanding for future efforts to improve the functionality of hPSC-derived hepatocytes and thereby increase the value of related models.

  • 123.
    Godoy, Patricio
    et al.
    IfADo-Leibniz Research Centre for Working Environment and Human Factors at the Technical University Dortmund, Dortmund, Germany / Department of Physiology, Faculty of Biological Sciences, University of Concepción, Chile.
    Schmidt-Heck, Wolfgang
    Leibniz Institute for Natural Product Research and Infection Biology eV-Hans-Knöll Institute, Jena, Germany.
    Natarajan, Karthick
    University of Cologne, Institute of Neurophysiology and Center for Molecular Medicine Cologne (CMMC), Cologne, Germany.
    Lucendo-Villarin, Baltasar
    MRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, United Kingdom.
    Szkolnicka, Dagmara
    MRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, United Kingdom.
    Asplund, Annika
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Takara Bio Europe AB (former Cellartis AB), Gothenburg, Sweden.
    Björquist, Petter
    NovaHep AB, Gothenburg, Sweden.
    Widera, Agata
    IfADo-Leibniz Research Centre for Working Environment and Human Factors at the Technical University Dortmund, Dortmund, Germany.
    Stöber, Regina
    IfADo-Leibniz Research Centre for Working Environment and Human Factors at the Technical University Dortmund, Dortmund, Germany.
    Campos, Gisela
    IfADo-Leibniz Research Centre for Working Environment and Human Factors at the Technical University Dortmund, Dortmund, Germany.
    Hammad, Seddik
    IfADo-Leibniz Research Centre for Working Environment and Human Factors at the Technical University Dortmund, Dortmund, Germany.
    Sachinidis, Agapios
    University of Cologne, Institute of Neurophysiology and Center for Molecular Medicine Cologne (CMMC), Cologne, Germany.
    Chaudhari, Umesh
    University of Cologne, Institute of Neurophysiology and Center for Molecular Medicine Cologne (CMMC), Cologne, Germany.
    Damm, Georg
    Charité University Medicine Berlin, Department of General-, Visceral- and Transplantation Surgery, Berlin, Germany.
    Weiss, Thomas S.
    Center for Liver Cell Research, Department of Pediatrics and Juvenile Medicine, University of Regensburg Hospital, Regensburg, Germany.
    Nüssler, Andreas
    Eberhard Karls University Tübingen, BG Trauma Center, Siegfried Weller Institut, Tübingen, Germany.
    Synnergren, Jane
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Edlund, Karolina
    IfADo-Leibniz Research Centre for Working Environment and Human Factors at the Technical University Dortmund, Dortmund, Germany.
    Küppers-Munther, Barbara
    Takara Bio Europe AB (former Cellartis AB), Gothenburg, Sweden.
    Hay, David C.
    MRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, United Kingdom.
    Hengstler, Jan G.
    IfADo-Leibniz Research Centre for Working Environment and Human Factors at the Technical University Dortmund, Dortmund, Germany.
    Gene networks and transcription factor motifs defining the differentiation of stem cells into hepatocyte-like cells2015Ingår i: Journal of Hepatology, ISSN 0168-8278, E-ISSN 1600-0641, Vol. 63, nr 4, s. 934-942Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    BACKGROUND & AIMS: The differentiation of stem cells to hepatocyte-like cells (HLC) offers the perspective of unlimited supply of human hepatocytes. However, the degree of differentiation of HLC remains controversial. To obtain an unbiased characterization, we performed a transcriptomic study with HLC derived from human embryonic and induced stem cells (ESC, hiPSC) from three different laboratories.

    METHODS: Genome-wide gene expression profiles of ESC and HLC were compared to freshly isolated and up to 14days cultivated primary human hepatocytes. Gene networks representing successful and failed hepatocyte differentiation, and the transcription factors involved in their regulation were identified.

    RESULTS: Gene regulatory network analysis demonstrated that HLC represent a mixed cell type with features of liver, intestine, fibroblast and stem cells. The "unwanted" intestinal features were associated with KLF5 and CDX2 transcriptional networks. Cluster analysis identified highly correlated groups of genes associated with mature liver functions (n=1057) and downregulated proliferation associated genes (n=1562) that approach levels of primary hepatocytes. However, three further clusters containing 447, 101, and 505 genes failed to reach levels of hepatocytes. Key TF of two of these clusters include SOX11, FOXQ1, and YBX3. The third unsuccessful cluster, controlled by HNF1, CAR, FXR, and PXR, strongly overlaps with genes repressed in cultivated hepatocytes compared to freshly isolated hepatocytes, suggesting that current in vitro conditions lack stimuli required to maintain gene expression in hepatocytes, which consequently also explains a corresponding deficiency of HLC.

    CONCLUSIONS: The present gene regulatory network approach identifies key transcription factors which require modulation to improve HLC differentiation.

  • 124.
    Gopalan Nair, Rekha
    Högskolan i Skövde, Institutionen för biovetenskap.
    Cloning and functional analysis of an arsB gene responsible for arsenic sequestration in Lysinibacillus sphaericus2016Självständigt arbete på avancerad nivå (magisterexamen), 20 poäng / 30 hpStudentuppsats (Examensarbete)
  • 125.
    Grankvist, Gunne
    et al.
    Department of Social and Behavioural Studies, University West, Trollhättan, Sweden.
    Kajonius, Petri
    Department of Social and Behavioural Studies, University West, Trollhättan, Sweden.
    Persson, Björn
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    The Relationship between Mind-Body Dualism and Personal Values2016Ingår i: International Journal of Psychological Studies, ISSN 1918-7211, E-ISSN 1918-722X, Vol. 8, nr 2, s. 126-132Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    Dualists view the mind and the body as two fundamental different “things”, equally real and independent of each other. Cartesian thought, or substance dualism, maintains that the mind and body are two different substances, the non-physical and the physical, and a causal relationship is assumed to exist between them. Physicalism, on the other hand, is the idea that everything that exists is either physical or totally dependent of and determined by physical items. Hence, all mental states are fundamentally physical states. In the current study we investigated to what degree Swedish university students’ beliefs in mind-body dualism is explained by the importance they attach to personal values. A self-report inventory was used to measure their beliefs and values. Students who held stronger dualistic beliefs attach less importance to the power value (i.e., the effort to achieve social status, prestige, and control or dominance over people and resources). This finding shows that the strength in laypeople’s beliefs in dualism is partially explained by the importance they attach to personal values

  • 126.
    Granéli, Cecilia
    et al.
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Discovery Sciences, IMED Biotech Unit, AstraZeneca Gothenburg, Mölndal, Sweden.
    Hicks, Ryan
    Discovery Sciences, IMED Biotech Unit, AstraZeneca Gothenburg, Mölndal, Sweden.
    Brolén, Gabriella
    Discovery Sciences, IMED Biotech Unit, AstraZeneca Gothenburg, Mölndal, Sweden.
    Synnergren, Jane
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Sartipy, Peter
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Global Medicines Development, CVRM, AstraZeneca Gothenburg, Mölndal, Sweden.
    Diabetic Cardiomyopathy Modelling Using Induced Pluripotent Stem Cell Derived Cardiomyocytes: Recent Advances and Emerging Models2019Ingår i: Stem Cell Reviews, ISSN 1550-8943, E-ISSN 1558-6804, Vol. 15, nr 1, s. 13-22Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    The global burden of diabetes has drastically increased over the past decades and in 2017 approximately 4 million deaths were caused by diabetes and cardiovascular complications. Diabetic cardiomyopathy is a common complication of diabetes with early manifestations of diastolic dysfunction and left ventricular hypertrophy with subsequent progression to systolic dysfunction and ultimately heart failure. An in vitro model accurately recapitulating key processes of diabetic cardiomyopathy would provide a useful tool for investigations of underlying disease mechanisms to further our understanding of the disease and thereby potentially advance treatment strategies for patients. With their proliferative capacity and differentiation potential, human induced pluripotent stem cells (iPSCs) represent an appealing cell source for such a model system and cardiomyocytes derived from induced pluripotent stem cells have been used to establish other cardiovascular related disease models. Here we review recently made advances and discuss challenges still to be overcome with regard to diabetic cardiomyopathy models, with a special focus on iPSC-based systems. Recent publications as well as preliminary data presented here demonstrate the feasibility of generating cardiomyocytes with a diabetic phenotype, displaying insulin resistance, impaired calcium handling and hypertrophy. However, capturing the full metabolic- and functional phenotype of the diabetic cardiomyocyte remains to be accomplished. 

  • 127.
    Grassini, Simone
    et al.
    Department of Psychology, University of Turku, Finland.
    Railo, Henry
    Department of Psychology, University of Turku, Finland.
    Valli, Katja
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Department of Psychology, University of Turku, Finland.
    Revonsuo, Antti
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Department of Psychology, University of Turku, Finland.
    Koivisto, Mika
    Department of Psychology, University of Turku, Finland.
    Visual features and perceptual context modulate attention towards evolutionarily relevant threatening stimuli: Electrophysiological evidence2019Ingår i: Emotion, ISSN 1528-3542, E-ISSN 1931-1516, Vol. 19, nr 2, s. 348-364Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    The snake detection hypothesis claims that predatory pressure from snakes has shaped the primate visual system, but we still know very little about how the brain processes evolutionarily important visual cues, and which factors are crucial for quick detection of snakes. We investigated how visual features modulate the electrophysiological markers of early attentional processes. In Experiment 1, we compared snake, rope, gun, and bird images to isolate the effects due to curvilinearity of the stimuli. The results showed that both snake and rope images elicited enhanced P1 and N1 event-related potential components as well as early posterior negativity (EPN). In Experiment 2, we studied whether nonthreatening curvilinear images (i.e., ropes) still elicit the enhanced electrophysiological responses when snake images are not presented as stimuli, and therefore the context does not provoke top-down attention to curvilinear shapes. Rope images still evoked an enhanced EPN, suggesting that curvilinear shapes are preferably captured by attentional processes. However, this effect was smaller than in Experiment 1, in which snake images were present. Thus, our results hint to the possibility that the perceptual context may interact with processing of shape information, drawing attention to curvilinear shapes when the presence of snakes is expectable. Furthermore, we observed that spatial frequency of the visual stimuli modulated especially the early electrophysiological responses, and decreased the differences between stimulus categories in EPN without completely eliminating them. The findings suggest that low-level and high-level mechanisms interact to give an attentional priority to potentially threatening stimuli.

  • 128.
    Grassini, Simone
    et al.
    Department of Psychology, University of Turku, Finland.
    Revonsuo, Antti
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Department of Psychology, University of Turku, Finland.
    Castellotti, Serena
    Department of Psychology, University of Turku, Finland / Department of Psychology, University of Florence, Italy.
    Petrizzo, Irene
    Department of Psychology, University of Turku, Finland / Department of Psychology, University of Florence, Italy.
    Benedetti, Viola
    Department of Psychology, University of Turku, Finland / Department of Psychology, University of Florence, Italy.
    Koivisto, Mika
    Department of Psychology, University of Turku, Finland.
    Processing of natural scenery is associated with lower attentional and cognitive load compared with urban ones2019Ingår i: Journal of Environmental Psychology, ISSN 0272-4944, E-ISSN 1522-9610, Vol. 62, s. 1-11Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    Environmental psychology has provided evidence for psychologically favorable effects of exposure to natural settings, by means of controlled laboratory experiments as well as outdoor field studies. Most of these studies have employed subjective rating scales to assess processes and outcomes of exposure to nature, while only few of them have used physiological measures to assess the neural correlates of these benefits. The present study used electroencephalography (EEG) to explore how the brain engages in processing of images of natural vs. urban scenery. During EEG recording, the participants (n = 32) were presented with a series of photos depicting urban or natural scenery. Participants rated the sceneries for their subjective relaxing value. Images of natural scenery were rated as more relaxing compared to the images of urban scenery. Event related potentials suggested a lower attentional demand for images of natural scenery compared to urban ones. Signal spectral analyses revealed differences in brain activity level and cognitive demand between natural and urban scenery. Our data suggest that the visual perception of natural environments calls for less attentional and cognitive processing, compared with urban ones. © 2019 Elsevier Ltd

  • 129.
    Grassini, Simone
    et al.
    Department of Psychology, University of Turku, Finland.
    Valli, Katja
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Department of Psychology, University of Turku, Turku, Finland /Turku Brain and Mind Center, University of Turku, Turku, Finland.
    Souchet, Jérémie
    Station D'Ecologie Théorique et Expérimentale Du CNRS, France.
    Aubret, Fabien
    Station D'Ecologie Théorique et Expérimentale Du CNRS, France.
    Segurini, Giulia V.
    Department of Psychology, University of Turku, Finland.
    Revonsuo, Antti
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Department of Psychology, University of Turku, Finland.
    Koivisto, Mika
    Department of Psychology, University of Turku, Finland.
    Pattern matters: Snakes exhibiting triangular and diamond-shaped skin patterns modulate electrophysiological activity in human visual cortex2019Ingår i: Neuropsychologia, ISSN 0028-3932, E-ISSN 1873-3514, Vol. 131, s. 62-72Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    The neural and perceptual mechanisms that support the efficient visual detection of snakes in humans are still not fully understood. According to the Snake Detection Theory, selection pressures posed by snakes on early primates have shaped the development of the visual system. Previous studies in humans have investigated early visual electrophysiological activity in response to snake images vs. various alternative dangerous or non-dangerous stimuli. These studies have shown that the Early Posterior Negativity (EPN) component is selectively elicited by snake or snake-like images. Recent findings yielded the complementary/alternative hypothesis that early humans (and possibly other primates) evolved an aversion especially for potentially harmful triangular shapes, such as teeth, claws or spikes. In the present study we investigated the effect of triangular and diamond-shaped patterns in snake skins on the ERP correlates of visual processing in humans. In the first experiment, we employed pictures of snakes displaying either triangular/diamond-shaped patterns or no particular pattern on their skins, and pictures of frogs as control. Participants observed a random visual presentation of these pictures. Consistent with previous studies, snakes elicited an enhanced negativity between 225 and 300 ms (EPN) compared to frogs. However, snakes featuring triangular/diamond-shaped patterns on their skin produced an enhanced EPN compared to the snakes that did not display such patterns. In a second experiment we used pictures displaying only skin patterns of snakes and frogs. Results from the second experiment confirmed the results of the first experiment, suggesting that triangular snake-skin patterns modulate the activity in human visual cortex. Taken together, our results constitute an important contribution to the snake detection theory. 

  • 130.
    Grundkvist, Anders
    Högskolan i Skövde, Institutionen för biovetenskap.
    Tillväxt av alger i Vänern: Abiotiska faktorers inverkan på algtillväxt i Vänern2014Självständigt arbete på grundnivå (kandidatexamen), 10 poäng / 15 hpStudentuppsats (Examensarbete)
  • 131.
    Gusevac, Stela
    Högskolan i Skövde, Institutionen för biovetenskap.
    Emotion Regulation: Functional neuroimaging studies of cognitive reappraisal2014Självständigt arbete på grundnivå (kandidatexamen), 10 poäng / 15 hpStudentuppsats (Examensarbete)
    Abstract [en]

    The importance of investigating Emotion Regulation (ER) may be self-evident, given that emotions have a substantial impact on our daily lives. ER encompasses set of processes that people go through in order to cultivate their feelings that arise at the moment and produce some response. Brain-imaging studies of ER have broadly focused on examining cognitive strategies, such as reappraisal, in order to understand underlying variables that contribute to the development of this particular process of emotions. The main focus in this paper was to summarize some of the observation done by functional Magnetic Resonance Imaging (fMRI) on neural processes underlying cognitive reappraisal. Furthermore, the paper will discuss some of these experiments that have been made through the last 15 years in the field where indications have been somewhat confusing when it comes to certain aspects of presented data, especially in comparison with other studies. Finally, a brief overview and some of the significant contributions, such as a process model of ER, to the field of ER have been presented and discussed. Cognitive reappraisal has been shown to effectively down-regulate subjective emotional experience. Even though many studies have been performed in measuring brain-activity when engaging in cognitive reappraisal, a unified and accepted agreement has yet not been found. In broader terms, brain-responses when engaging in cognitive reappraisal seem to operate in a particular manner where different parts of prefrontal and parietal cortex execute control over subcortical regions, such as amygdala.

  • 132.
    Haglund, Cecilia
    Högskolan i Skövde, Institutionen för biovetenskap.
    The relationships of empathy, oxytocin, and depression2014Självständigt arbete på grundnivå (kandidatexamen), 10 poäng / 15 hpStudentuppsats (Examensarbete)
    Abstract [en]

    Empathy, oxytocin, and depression are three subjects that are widely researched. Empathy means experiencing or understanding the emotions of an individual who is being observed. Oxytocin has frequently been shown to have a connection to lactation and labor. Depression is a common sickness that results in malfunctioning, suffering, and a shorter life. The mutual relationship and connection of all three has received limited research. The aim of this essay is to explore how they all relate to one another, to see what neural areas of involvement they have in common, and finally to see if there is a potential to administer oxytocin in order to alter empathy and/or depression. The sources used are published literature on the topics, found in for example Google Scholar and Worldcat. What was found was that both emotional and cognitive empathy have a positive relationship with oxytocin. Emotional empathy has in most research a positive relationship with depression while cognitive empathy seems to have a negative relationship with depression.Depression has a negative correlation with oxytocin. The neural areas of common involvement were amygdala, hippocampus, and cingulate cortex. Future research should look at how empathy, oxytocin, and depression affect each other, and why this happens. It is also important to look at the possibilities of affecting a neural area involved in empathy, oxytocin, and/or depression in order to make an impact on any of these factors.

  • 133.
    Hamdi, Cassandra
    Högskolan i Skövde, Institutionen för biovetenskap.
    Clostridium difficile: Rapid typing Clostridium difficile using MALDI-TOF MS analysis2019Självständigt arbete på grundnivå (kandidatexamen), 20 poäng / 30 hpStudentuppsats (Examensarbete)
  • 134.
    Hammarberg, Maxine
    Högskolan i Skövde, Institutionen för biovetenskap.
    Kognitiv kontroll, självreglering och impulsivitet2019Självständigt arbete på grundnivå (kandidatexamen), 15 poäng / 22,5 hpStudentuppsats (Examensarbete)
    Abstract [sv]

    Kognitiv kontroll är förmågan att flexibelt anpassa sitt beteende till en eller flera specifika inre motiverande handlingar. Kognitiv kontroll möjliggör denna fokusering för de krav som informationsprocessen kräver. Kognitiv kontroll samt självreglering handlar bland annat om en så kallad top-down informationsprocess i ett globalt neuralt nätverk som pågår i den mänskliga hjärnan. Vi människor utövar denna kognitiva kontroll varje dag i vårat vardagliga liv utan vidare reflektioner. Detta sker genom flera informationsprocesser samtidigt och det är därför svårt att finna en enhetlig integrerad förklaring till de underliggande neurala mekanismerna. Syftet med arbetet är att förklara vad kognitiv kontroll, självreglering och impulsivitet innebär. Kopplingen mellan dessa två kognitiva kapaciteter föreskrivs i denna uppsats gällande de neurala mekanismerna och även kopplingen mellan kognitiv kontroll och självreglering i form av prestationer av både kontrollerade experiment och det vardagliga livet. Medan impulsivitet kopplat till kognitiv kontroll och självreglering är konsekvensen av när de neurala och kognitiva processerna brister i någon mening. Studier relaterat till kognitiv kontroll, inhibering och impulsbeteende använder sig bland annat av functional magnetic resonance imaging (fMRI) för att studera och undersöka detta kognitiva fenomen. Idag beskrivs impulsivitet samt bristande kontroll möjligen som ett maladaptivt beteende med hjälp av bland annat fMRI. Ytterligare fMRI studier har även visat på att kognitiv kontroll samt bristande kognitiv kontroll möjligen kan handla om en minskad eller ökad aktivering i nucleus accumbens, insulan och anterior cingulate cortex (ACC). Forskare inom ämnet har försökt att grundligt undersöka detta neurala nätverk genom flera olika perspektiv och därav presenterar uppsatsen några olika exempel av dessa ingångar för att möjliggöra ett brett perspektiv av denna komplexa mentala kapacitet. Resultaten inom ämnet visar än idag på en komplex multifaciterad natur av de underliggande neurala korrelaten.

  • 135.
    Hammarsten Yder, Emma
    Högskolan i Skövde, Institutionen för biovetenskap.
    Sex Differences in Adolescent Depression2018Självständigt arbete på grundnivå (kandidatexamen), 15 poäng / 22,5 hpStudentuppsats (Examensarbete)
    Abstract [en]

    At the age of 13, the 2:1 ratio becomes evident. It entails the fact that after puberty, twice as many females as compared to males suffer from depressive episodes. Much research has been conducted to highlight key contributing factors that aid in the onset and the timing of the 2:1 ratio. Many researchers emphasize hormonal influences and the onset of puberty as key contributors, with theories such as the gonadic theory andthe interactional hypothesis both highlighting the role of hormones in the existence and the emergence of the 2:1 ratio during adolescence. Furthermore, a large variety of researchers emphasize females increased stress sensitivity and stress reactivity as key contributors to the 2:1 ratio. Critically, research concerning hormonal- and stress-related factors will be included. However, an additional focus will be on neurodevelopmental sex differences. This, as brain-based sex differences have been paid too little attention in theories and models concerning the emergence of the 2:1 ratio during adolescence. Results from research conducted to unravel the mystery of sex differences within the adolescent brain emphasize the impact of sex hormones on the maturational sexual differentiation occurring within the adolescent brain. It has been hypothesized that increases in female adolescent depression might occur in accordance with upsurges in peripheral estrogen levels, during puberty. This seems to suggest that there is an interaction between the effects of circulating ovarian hormones in relation to both sexual differentiation in brain organization and depression susceptibility. Hence, the point of this essay is to delineate key contributing factors that potentially govern the existence and onset of the 2:1 ratio during adolescence by emphasizing the areas of (a) sex-based neurodevelopmental factors, (b) hormonal factors and (c) stress-related factors.

  • 136.
    Handlin, Linda
    et al.
    Högskolan i Skövde, Forskningscentrum för Systembiologi. Högskolan i Skövde, Institutionen för vård och natur.
    Hydbring-Sandberg, Eva
    Swedish Univ Agr Sci, Dept Anat Physiol & Biochem, Uppsala, Sweden .
    Nilsson, Anne
    Swedish Univ Agr Sci, Dept Anim Environm & Hlth, Skara, Sweden .
    Ejdebäck, Mikael
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Göteborgs universitet.
    Jansson, Anna
    Swedish Univ Agr Sci, Dept Anim Nutr & Management, S-75007 Uppsala, Sweden.
    Uvnäs-Moberg, Kerstin
    Högskolan i Skövde, Forskningscentrum för Systembiologi. Högskolan i Skövde, Institutionen för vård och natur.
    Short-Term Interaction between Dogs and Their Owners: Effects on Oxytocin, Cortisol, Insulin and Heart Rate-An Exploratory Study2011Ingår i: Anthrozoos, ISSN 0892-7936, E-ISSN 1753-0377, Vol. 24, nr 3, s. 301-315Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    The aim of this exploratory study was to determine heart rate and the levels of oxytocin, cortisol, and insulin in dogs and their owners in response to a short-term interaction. In addition, the dogs' behavior was studied. The owners' responses were compared with those obtained from a control group. Ten female volunteers and their own male Labrador dogs participated in an experiment during which the owner stroked, petted, and talked with her dog during the first 3 minutes. Blood samples were collected from both dog and owner before (0) and at 1, 3, 5, 15, 30, and 60 minutes after the start of the interaction. Blood samples were analyzed by EIA. Heart rate was monitored telemetrically. The data were analyzed using linear mixed models and paired t-tests. The dogs' oxytocin levels were significantly increased 3 minutes after the start of the interaction (p = 0.027). Cortisol levels were significantly increased after 15 and 30 minutes (p = 0.004 and p = 0.022, respectively), and heart rate was significantly decreased after 55 minutes (p = 0.008). The dogs displayed normal behaviors during the experiment. The owners' oxylocin levels peaked between 1 and 5 minutes after interaction (p = 0.026). No such effect was seen in the controls. Cortisol levels displayed a significant decrease at 15 or 30 minutes in both owners and controls, and insulin levels did so at 60 minutes (p = 0.030, p = 0.002 and p = 0.002, p < 0.0001, respectively). Heart rate decreased significantly in the owners at 55 and 60 minutes (p = 0.0008) but not in the controls. In conclusion, short-term sensory interaction between dogs and their owners influences hormonal levels and heart rate. However, further studies need to be performed in order to better understand the effects of interaction between dogs and their owners.

  • 137.
    Handlin, Linda
    et al.
    Högskolan i Skövde, Institutionen för vård och natur. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Nilsson, Anne
    Högskolan i Skövde, Institutionen för vård och natur. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Ejdebäck, Mikael
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Hydbring-Sandberg, Eva
    University of Agricultural Sciences, Uppsala.
    Uvnäs-Moberg, Kerstin
    Högskolan i Skövde, Institutionen för vård och natur. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Associations between the Psychological Characteristics of the Human-Dog Relationship and Oxytocin and Cortisol Levels2012Ingår i: Anthrozoos, ISSN 0892-7936, E-ISSN 1753-0377, Vol. 25, nr 2, s. 215-228Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    The aim of the present study was to explore possible correlations between dog owners' relationships with their dogs, as measured with the Monash Dog Owner Relationship Scale (MDORS), and oxytocin and cortisol levels in both the owners and their dogs. Ten female owners of male Labrador Retrievers completed the MDORS. The scores obtained from the single items, subscales, and total score of the MDORS were calculated. Ten blood samples were collected from each dog owner and her dog during a 60-minute interaction. Blood samples were analyzed for oxytocin and cortisol by Enzyme Immuno Assay (EIA) and mean values of oxytocin and cortisol were calculated in both owners and dogs. The MDORS scores obtained were correlated with basal and mean oxytocin and cortisol levels. The correlation analysis revealed some relationships between the scores of items in the MDORS that reflect the character of the dog-owner-relationship and the owners' hormone levels. For example, higher oxytocin levels in the owners were associated with greater frequency in kissing their dogs (rs = 0.864, p = 0.001). Lower cortisol levels in the owners were associated with their perception that it will be more traumatic when their dog dies (rs = -0.730, p = 0.025). The correlation analysis also revealed some relationships between the scores of items in the MDORS and the dogs' hormone levels. For example, greater frequency in owners kissing their dogs was associated with higher oxytocin levels in the dogs (rs = 0.753, p = 0.029). Six items in the subscale Perceived Costs, as well as the subscale itself, correlated significantly with the dogs' oxytocin levels (rs = 0.820, p = 0.007), that is, the lower the perceived cost, the higher the dogs' oxytocin levels. In addition, significant correlations between the oxytocin levels of the owners and the dogs were demonstrated. Possible mechanisms behind these correlations are discussed. In conclusion, the scores of some items and the subscales of the MDORS correlated with oxytocin, and to a lesser extent cortisol, levels in both the owners and dogs.

  • 138.
    Hedberg Oldfors, Carola
    et al.
    Sahlgrenska Academy, University of Gothenburg.
    Garcia Dios, Diego
    Sahlgrenska Academy, University of Gothenburg.
    Linder, Anna
    Sahlgrenska Academy, University of Gothenburg.
    Visuttijai, Kittichate
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Sahlgrenska Academy, University of Gothenburg.
    Samuelson, Emma
    Sahlgrenska Academy, University of Gothenburg.
    Karlsson, Sandra
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Nilsson, Staffan
    Chalmers University of Technology.
    Behboudi, Afrouz
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Analysis of an independent tumor suppressor locus telomeric to Tp53 suggested Inpp5k and Myo1c as novel tumor suppressor gene candidates in this region2015Ingår i: BMC Genetics, ISSN 1471-2156, E-ISSN 1471-2156, Vol. 16, nr 1, artikel-id 80Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    Several reports indicate a commonly deleted chromosomal region independent from, and distal to the TP53 locus in a variety of human tumors. In a previous study, we reported a similar finding in a rat tumor model for endometrial carcinoma (EC) and through developing a deletion map, narrowed the candidate region to 700 kb, harboring 19 genes. In the present work real-time qPCR analysis, Western blot, semi-quantitative qPCR, sequencing, promoter methylation analysis, and epigenetic gene expression restoration analyses (5-aza-2'-deoxycytidine and/or trichostatin A treatments) were used to analyze the 19 genes located within the candidate region in a panel of experimental tumors compared to control samples.

    RESULTS:

    Real-time qPCR analysis suggested Hic1 (hypermethylated in cancer 1), Inpp5k (inositol polyphosphate-5-phosphatase K; a.k.a. Skip, skeletal muscle and kidney enriched inositol phosphatase) and Myo1c (myosin 1c) as the best targets for the observed deletions. No mutation in coding sequences of these genes was detected, hence the observed low expression levels suggest a haploinsufficient mode of function for these potential tumor suppressor genes. Both Inpp5k and Myo1c were down regulated at mRNA and/or protein levels, which could be rescued in gene expression restoration assays. This could not be shown for Hic1.

    CONCLUSION:

    Innp5k and Myo1c were identified as the best targets for the deletions in the region. INPP5K and MYO1C are located adjacent to each other within the reported independent region of tumor suppressor activity located at chromosome arm 17p distal to TP53 in human tumors. There is no earlier report on the potential tumor suppressor activity of INPP5K and MYO1C, however, overlapping roles in phosphoinositide (PI) 3-kinase/Akt signaling, known to be vital for the cell growth and survival, are reported for both. Moreover, there are reports on tumor suppressor activity of other members of the gene families that INPP5K and MYO1C belong to. Functional significance of these two candidate tumor suppressor genes in cancerogenesis pathways remains to be investigated.

  • 139.
    Hedblom, Carolina
    Högskolan i Skövde, Institutionen för biovetenskap.
    Sense and Sensibility: Three Components of Moral Sensitivity and Their Underlying Neural Mechanisms2019Självständigt arbete på grundnivå (kandidatexamen), 15 poäng / 22,5 hpStudentuppsats (Examensarbete)
    Abstract [en]

    A phenomenon explored in the field of the cognitive neuroscience of morality is moral sensitivity, which is a collective name for a subjective experience related to the ability to detect and respond to morally relevant cues in a given social situation. This thesis will review the underlying neural mechanisms of moral sensitivity and three key components: Empathy, moral disgust and moral intuition, also called moral “gut-feeling.” Initially, the thesis provides a basic explanation of what moral sensitivity entails and the primary observations of which brain regions are often associated with moral sensitivity. Studies show that emotion and cognition seem to be essential to the experience of moral sensitivity, which will be further emphasized by reviewing the chosen key components. Research on morality and empathy suggests that the affective and the cognitive components of empathy each are essential to moral sensitivity. The second key component, moral disgust, describes how moral sensitive people react to violations to society by being motivated to keep away from social interactions with poor moral influence. Research on the third key component explains how moral sensitivity can be affected by moral intuitions, here moral “gut-feelings,” depending on the closeness and emotional salience in a given situation.

  • 140.
    Hedin, Adam
    Högskolan i Skövde, Institutionen för biovetenskap.
    Memory distortion and source amnesia: A review of why our memories can be badly mistaken2018Självständigt arbete på grundnivå (kandidatexamen), 15 poäng / 22,5 hpStudentuppsats (Examensarbete)
    Abstract [en]

    Our memory is prone to distortions which in everyday life can lead to mistaken memories. This thesis investigates memory distortion. In addition, one might recall (e.g. an event) correctly but misremember the source of the event (e.g. place or time of the event); this particular type of memory distortion is called source amnesia. Here, an overview of cognitive theories of memory distortion as well as the neuroscience behind memory distortion is provided. In addition, the particular memory distortion of source amnesia where one is unable to acquire when or where a fact was learned is further investigated. Results indicate that an overlap of qualities related to the information being learned causes information to be linked to wrong sources, thus creating distorted memories. Misinformation is also indicated to produce impairment in memory. In memory distortions, memory impairments are representative in various areas of the brain, including the hippocampus and the amygdala in the medial temporal lobes as well as in the frontal cortex and in the visual cortex. These key areas are also closely related to brain aging in Alzheimer´s disease and in schizophrenia, depression, posttraumatic stress disorder (PTSD) and in drug and alcohol abuse. Individuals inflicted with these disease symptoms seem to be more prone to source amnesia compared to controls. The limitations and future directions of what we can study regarding memory distortion and source amnesia are also presented in this thesis.

  • 141.
    Heerspink, Hiddo J. L.
    et al.
    Department of Clinical Pharmacy and Pharmacology, University of Groningen, University Medical Center, Groningen, Netherlands.
    Sjöström, C. David
    AstraZeneca, Gothenburg, Sweden.
    Inzucchi, Silvio E.
    Section of Endocrinology, Yale University School of Medicine, New Haven, CT, United States.
    Hallow, Melissa K.
    Department of Epidemiology and Biostatistics, University of Georgia School of Public Health, Athens, GA, United States.
    Cain, Valerie A.
    Bogier Clinical and IT Solutions, Inc., Raleigh, NC, United States.
    Rossing, Peter
    Steno Diabetes Center Copenhagen, Gentofte, Denmark / Department of Clinical Medicine, University of Copenhagen, Copenhagen, Denmark.
    Stefansson, Bergur V.
    AstraZeneca, Gothenburg, Sweden.
    Sartipy, Peter
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. AstraZeneca, Gothenburg, Sweden.
    Reduction in albuminuria with dapagliflozin cannot be predicted by baseline clinical characteristics or changes in most other risk markers2019Ingår i: Diabetes, obesity and metabolism, ISSN 1462-8902, E-ISSN 1463-1326, Vol. 21, nr 3, s. 720-725Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    The sodium glucose co-transporter-2 inhibitor dapagliflozin has been shown to decrease urinary albumin-to-creatinine ratio (UACR). This effect, however, varies among individual patients. In this study, we assessed the baseline characteristics and concurrent changes in other cardiovascular risk markers that might be associated with UACR response to dapagliflozin. A pooled analysis of 11 phase 3 randomized, controlled clinical trials was performed. UACR change from baseline after 24 weeks treatment with dapagliflozin 10 mg/d in 531 patients with type 2 diabetes and UACR ≥30 mg/g at baseline was determined. UACR response was defined as >30% reduction from baseline at 24 weeks, whereas UACR non-response was defined as ≤30% reduction at 24 weeks. A total of 288 (54%) patients were classified as responders and 243 (46%) as non-responders. At 24 weeks, the UACR-adjusted mean change from baseline was −71.2% and 25.9% in responders and non-responders, respectively. Baseline characteristics were similar between both groups. Changes in HbA1c and body weight were comparable across groups. Responders showed a numerically larger reduction in estimated glomerular filtration rate and systolic blood pressure versus non-responders. UACR reduction to dapagliflozin is an individual characteristic that cannot be predicted by baseline clinical features or changes in metabolic variables. Whether UACR response would improve long-term renal and cardiovascular outcomes remains to be determined. 

  • 142.
    Heikura, Emelie
    Högskolan i Skövde, Institutionen för biovetenskap.
    Resilience in cognitive neuroscience: The 'Ordinary Magic' of human recovery2018Självständigt arbete på grundnivå (kandidatexamen), 15 poäng / 22,5 hpStudentuppsats (Examensarbete)
    Abstract [en]

    Resilience is a dynamic process that reflect individual ability to successfully recover and positively adapt to severe circumstances. In this essay, attachment, social support, self- regulation and affective processing, taken from the "shortlist of resilience" provided by Masten, are further analyzed and connected to findings within neuroscience. The result suggest that brain areas originated from the prefrontal cortex, such as orbitofrontal and dorsolateral cortex, are two major neural correlates to attachment and stress- and self- regulation. The amygdala is also an area of interest, because of its’ connection to emotions and affective memories. Research on affective style suggest that the functions associated with the prefrontal cortex are dampening the effect of the amygdala, which later supports resilience and recovery. The area of resilience is suffering from a lacking general definition, measurement and operationalization, which is argued to be the major challenge of this research area. Prominent researchers prospect that resilience research will continue to flourish within the area of neuroscience, and that further discoveries will be made concerning how this cognitive ability is related to structural and functional differences in the brain.

  • 143.
    Helldin, Tove
    et al.
    Högskolan i Skövde, Institutionen för informationsteknologi. Högskolan i Skövde, Forskningscentrum för Informationsteknologi.
    Pernestig, Anna-Karin
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Tilevik, Diana
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Towards a Clinical Support System for the Early Diagnosis of Sepsis2017Ingår i: Digital Human Modeling - Applications in Health, Safety, Ergonomics, and Risk Management: Health and Safety: 8th International Conference, DHM 2017 Held as Part of HCI International 2017 Vancouver, BC, Canada, July 9–14, 2017, Proceedings, Part II / [ed] Vincent G. Duffy, Springer, 2017, s. 23-35Konferensbidrag (Refereegranskat)
    Abstract [en]

    Early and accurate diagnosis of sepsis is critical for patientsafety. However, this is a challenging task due to the very general symptomsassociated with sepsis, the immaturity of the tools used by theclinicians as well as the time-delays associated with the diagnostic methodsused today. This paper explores current literature regarding guidelinesfor clinical decision support, and support for sepsis diagnosis inparticular, together with guidelines extracted from interviews with fourclinicians and one biomedical analyst working at a hospital and clinicallaboratory in Sweden. The results indicate the need for the developmentof visual and interactive aids for enabling early and accurate diagnosisof sepsis.

  • 144.
    Hemeren, Paul
    et al.
    Högskolan i Skövde, Institutionen för informationsteknologi. Högskolan i Skövde, Forskningscentrum för Informationsteknologi.
    Johannesson, Mikael
    Högskolan i Skövde, Institutionen för informationsteknologi. Högskolan i Skövde, Forskningscentrum för Informationsteknologi.
    Lebram, Mikael
    Högskolan i Skövde, Institutionen för informationsteknologi. Högskolan i Skövde, Forskningscentrum för Informationsteknologi.
    Eriksson, Fredrik
    Högskolan i Skövde, Institutionen för informationsteknologi. Högskolan i Skövde, Forskningscentrum för Informationsteknologi.
    Ekman, Kristoffer
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Veto, Peter
    Högskolan i Skövde, Forskningscentrum för Informationsteknologi. Högskolan i Skövde, Institutionen för informationsteknologi.
    The Use of Visual Cues to Determine the Intent of Cyclists in Traffic2014Ingår i: 2014 IEEE International Inter-Disciplinary Conference on Cognitive Methods in Situation Awareness and Decision Support (CogSIMA), IEEE Press, 2014, s. 47-51Konferensbidrag (Refereegranskat)
    Abstract [en]

    The purpose of this research was to answer the following central questions: 1) How accurate are human observers at predicting the behavior of cyclists as the cyclists approached a crossing? 2) If the accuracy is reliably better than chance, what cues were used to make the predictions? 3) At what distance from the crossing did the most critical cues occur? 4) Can the cues be used in a model that can reliably predict cyclist intent? We present results that show a number of indicators that can be used in to predict the intention of a cyclist, i.e., future actions of a cyclist, e.g., “left turn” or “continue forward” etc.

    Results of empirical studies show that humans are reasonably good at this type of prediction for a majority of the situations studied. However, some situations seem to contain conflicting information. The results also suggested that human prediction of intention is to a large extent relying on a single “strong” indicator, e.g., that the cyclist makes a clear “head movement”. Several “weaker" indicators that together could be a strong “combined indicator”, or equivalently strong evidence, is likely to be missed or too complex to be handled by humans in real-time. We suggest this line of research can be used to create decision support systems that predict the behavior of cyclists in traffic.

  • 145.
    Hillerton, Thomas
    Högskolan i Skövde, Institutionen för biovetenskap.
    Predicting adverse drug reactions in cancer treatment using a neural network based approach2018Självständigt arbete på avancerad nivå (magisterexamen), 10 poäng / 15 hpStudentuppsats (Examensarbete)
  • 146.
    Hiltunen, Seppo
    et al.
    University of Helsinki, Finland.
    Virta, Maarit
    University of Helsinki, Finland.
    Kallio, Sakari
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. University of Turku, Finland.
    Paavilainen, Petri
    University of Helsinki, Finland.
    The effects of hypnosis and hypnotic suggestions on the mismatch negativity in highly hypnotizable subjects2019Ingår i: International journal of clinical and experimental hypnosis, ISSN 0020-7144, E-ISSN 1744-5183, Vol. 67, nr 2, s. 192-216Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    The neural mechanisms associated with hypnosis were investigated in a group of 9 high hypnotizable subjects by measuring the mismatch negativity (MMN) component of the auditory eventrelated potential (ERP). ERPs were recorded using a passive oddball paradigm to sinusoidal standard and deviant tone stimuli of 500 and 520 Hz, respectively, in four conditions: prehypnosis, neutral hypnosis, hypnotic suggestion for altering the tone perception, and posthypnotic conditions. Earlier studies have indicated that hypnosis and hypnotic suggestions might have an effect on MMN, but the results of our study contradict these results: No statistically significant differences were found between the conditions in the MMN amplitudes.

  • 147.
    Hinrichsen, Hans-Harald
    et al.
    Dept. Evolutionary Ecology, Kiel, Germany.
    Large, Scott
    International Council for the Exploration of the Sea (ICES), Copenhagen, Denmark.
    Möllmann, Christian
    University of Hamburg, Institute of Hydrobiology and Fishery Science, Hamburg, Germany.
    Müller-Karulis, Bärbel
    Stockholm University, Baltic Sea Centre, Stockholm, Sweden.
    Neuenfeldt, Stefan
    Technical University of Denmark, National Institute of Aquatic Resources, Section for Marine Ecology and Oceanography, Charlottenlund, Denmark.
    Norrström, Niclas
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Schmidt, Jörn
    Christian-Albrechts-Universität zu Kiel, Department of Economics, Kiel, Germany.
    Sguotti, Camilla
    Institute for Hydrobiology and Fisheries Science, University of Hamburg, Hamburg, Germany.
    Tomczak, Maciej
    Stockholm University, Baltic Sea Centre, Stockholm, Sweden.
    Voss, Rudi
    Christian-Albrechts-Universität zu Kiel, Department of Economics, Kiel, Germany.
    Hamrén, Henrik
    Stockholm University, Baltic Sea Centre, Stockholm, Sweden.
    Report of the Workshop on DEveloping Integrated AdviCE for Baltic Sea ecosystem-based fisheries management (WKDEICE): 18-21 April 2016 Helsinki, Finland2016Rapport (Övrigt vetenskapligt)
    Abstract [en]

    The first ICES Workshop on DEveloping Integrated AdviCE for Baltic Sea ecosystem-based fisheries management (WKDEICE) had the aim to start identifying and devel-oping ways to include environmental and economic considerations into ICES advice on Baltic Sea fish stocks. The WKDEICE meeting was held in Helsinki, Finland, on18–21 April 2016, with 12 participants from three countries and was chaired by Chris-tian Möllmann (Germany), Rudi Voss (Germany), and Maciej T. Tomczak (Sweden). Focusing on Eastern Baltic cod (subdivisions 25-32), WKDEICE addressed five main topics:

    1)developing a strategy for integrating environmental and economic infor-mation in fish stock advice;

    2)conducting an integrated environmental assessment;

    3)conducting a socio-economic assessment;

    4)conducting short-term projections informed by environmental and economic conditions; and

    5)communicating the approach and the results.

    Eastern Baltic cod has been selected as a case study. The exercise will likely be ex-tended to the baltic clupeid stocks of herring and sprat.

    A central point of the meeting was to discuss and design a concept of operationalized Integrated Ecosystem Assessment (IEA) including short-term predictions, to be used in advice on the main Baltic Sea fish stocks. The group developed an operational strategy, and started to quantify potentially useful environmental indicators, focusing on hydrographic conditions influencing cod recruitment. Economic short-term fore-casts were established to include the human dimension, and to provide additional quantitative information on fishing options. The suggested integrated advice frame-work will be further developed using simulation modelling during a next meeting in 2017. This meeting will be coordinated with the ICES/HELCOM Working Group on Integrated Assessments of the Baltic Sea (WGIAB) and the Baltic Fisheries Assess-ment Working Group (WGBFAS) to test concepts, apply Management Strategy Eval-uation (MSE) models, and have direct feedback for relevant ICES bodies. 

  • 148.
    Hirche, Elin
    Högskolan i Skövde, Institutionen för biovetenskap.
    AM I FUNNY NOW?: The Neurological Basis of Humor Styles2019Självständigt arbete på grundnivå (kandidatexamen), 15 poäng / 22,5 hpStudentuppsats (Examensarbete)
    Abstract [en]

    The present thesis will provide an overview of how the four humor styles, affiliative, self-enhancing, aggressive, and self-defeating humor, are connected to different brain areas. The thesis will also include an overview of how humor in general, and especially three factors of humor including, processing, appreciation, and comprehension is connected to different brain areas. The present study found a connection between these three factors of humor and activation in the prefrontal cortex (PFC) and inferior frontal gyrus (IFG). The four humor styles were all connected to activity in the midbrain and nucleus accumbens (NAc), though they were found to differ in other parts of the brain. Affiliative humor and self-enhancing humor are humor styles found to share activation of similar brain areas, whereas self-enhancing and aggressive humor was found to the least extent share activation of the same brain areas. No neural differences in relation to the four humor styles have been found between men and woman, or between cultures.

  • 149.
    Holmberg, Emma
    Högskolan i Skövde, Institutionen för biovetenskap.
    Den döda vedens betydelse för artrikedom: Sambandet mellan volymen död ved och artrikedom i skyddade och ej skyddade skogar.2018Självständigt arbete på grundnivå (kandidatexamen), 20 poäng / 30 hpStudentuppsats (Examensarbete)
    Abstract [sv]

    Död ved i skogen har en viktig betydelse för den biologiska mångfalden. I Sverige är över 6000 arter knutna till död ved. När skogen utsätts för många störningar av oss människor påverkas artrikedomen relaterad till död ved. Volymen död ved har minskat och dess komposition förändrats, till följd av ett intensivt skogsbruk. Mängden död ved i framförallt brukade skogar är väsentligt mindre än vad som är hållbart för den biologiska mångfalden. Denna studie har inventerat död ved och vedlevande signalarter i barrdominerade skogar ägda av Skövde kommun. Detta för att visa på hur sambandet mellan volymen död ved och artrikedom ser ut inom och mellan naturreservat och brukade skogar.

    Resultatet visade att mängden död ved är större i naturreservat än i brukade skogar. Genomsnittet av volymen död ved i brukade skogar ägda av Skövde kommun är större jämfört med genomsnittet för Västra Götaland och landet som helhet. Ett starkt samband hittades mellan volymen död ved och artrikedom för mycket nedbruten ved men inte för hård ved eller mindre nedbruten ved. Detta kan delvis förklaras av de arter som användes för mått på artrikedom, mossor och lavar, främst prefererar ved i senare nedbrytningsstadie. Denna studie visar på att tillförsel av väl nedbruten ved är ger ett starkt utslag för artrikedomen i brukade skogar och framförallt i naturreservat. Det styrker vikten av att kontinuerligt tillföra död ved och låta den brytas ned, då olika arter är beroende av olika nedbrytningstadier. 

  • 150.
    Holmgren, Gustav
    et al.
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Department of Clinical Chemistry and Transfusion Medicine, Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden.
    Ghosheh, Nidal
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. Department of Clinical Chemistry/Transfusion Medicine, Sahlgrenska University Hospital, Gothenburg, Sweden.
    Zeng, Xianmin
    Buck Institute for Research on Aging, Buck Institute, Novato, California, USA.
    Bogestål, Yalda
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Sartipy, Peter
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi. AstraZeneca Research and Development, Global Medicines Development, Cardiovascular and Metabolic Diseases Global Medicines Development Unit, Mölndal, Sweden.
    Synnergren, Jane
    Högskolan i Skövde, Institutionen för biovetenskap. Högskolan i Skövde, Forskningscentrum för Systembiologi.
    Identification of stable reference genes in differentiating human pluripotent stem cells2015Ingår i: Physiological Genomics, ISSN 1094-8341, E-ISSN 1531-2267, Vol. 47, nr 6, s. 232-239Artikel i tidskrift (Refereegranskat)
    Abstract [en]

    Reference genes, often referred to as housekeeping genes (HKGs), are frequently used to normalize gene expression data based on the assumption that they are expressed at a constant level in the cells. However, several studies have shown that there may be a large variability in the gene expression levels of HKGs in various cell types. In a previous study, employing human embryonic stem cells (hESCs) subjected to spontaneous differentiation, we observed that the expression of commonly used HKG varied to a degree that rendered them inappropriate to use as reference genes under those experimental settings. Here we present a substantially extended study of the HKG signature in human pluripotent stem cells (hPSC), including nine global gene expression datasets from both hESC and human induced pluripotent stem cells (hiPSCs), obtained during directed differentiation towards endoderm-, mesoderm-, and ectoderm derivatives. Sets of stably expressed genes were compiled and a handful of genes (e.g., EID2, ZNF324B, CAPN10, and RABEP2) were identified as generally applicable reference genes in hPSCs across all cell lines and experimental conditions. The stability in gene expression profiles was confirmed by quantitative PCR (RT-qPCR) analysis. Taken together, the current results suggest that differentiating hPSCs have a distinct HKG signature, which in some aspects is different from somatic cell types, and underscore the necessity to validate the stability of reference genes under the actual experimental setup used. In addition, the novel putative HKGs identified in this study can preferentially be used for normalization of gene expression data obtained from differentiating hPSCs.

1234567 101 - 150 av 535
RefereraExporteraLänk till träfflistan
Permanent länk
Referera
Referensformat
  • apa
  • harvard1
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Annat format
Fler format
Språk
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Annat språk
Fler språk
Utmatningsformat
  • html
  • text
  • asciidoc
  • rtf