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Syntactic, Semantic and Referential Patterns in Biomedical Texts: towards in-depth text comprehension for the purpose of bioinformatics
University of Skövde, School of Humanities and Informatics.
University of Skövde, School of Humanities and Informatics.
2005 (English)In: Natural Language Understanding and Cognitive Science, Proceedings of the 2nd International Workshop on Natural Language Understanding and Cognitive Science, NLUCS 2005, In conjunction with ICEIS 2005, Miami, FL, USA, May 2005 / [ed] Bernadette Sharp, INSTICC Press, 2005, 68-77 p.Conference paper, (Refereed)
Abstract [en]

An essential part of bioinformatic research concerns the iterative process of validating hypotheses by analyzing facts stored in databases and in published literature. This process can be enhanced by automatic in-depth text understanding. A prerequisite for this is an adequate syntactic and semantic analysis. The paper presents the results of syntactic, semantic, and textual analysis of a corpus of biomedical abstracts. It focuses on the ways in which relevant molecular interactions are referred to in the abstracts, and proposes a strategy for linking natural language expressions to the standard notation used in Kyoto Encyclopedia of Genes and Genomes. The syntactic and semantic regularities observed in the language of biomedicine are also discussed from the cognitive point of view.

Place, publisher, year, edition, pages
INSTICC Press, 2005. 68-77 p.
Keyword [en]
Biomedical abstracts, Biomedical text, Iterative process, Natural language expressions, Semantic analysis, Standard notation, Text comprehensions, Textual analysis
Identifiers
URN: urn:nbn:se:his:diva-1650Scopus ID: 2-s2.0-33745695457ISBN: 972-8865-23-6 ISBN: 978-972-8865-23-8 OAI: oai:DiVA.org:his-1650DiVA: diva2:31926
Conference
2nd International Workshop on Natural Language Understanding and Cognitive Science, NLUCS 2005, in Conjunction with ICEIS 2005; Miami, FL; 24 May 2005 through 24 May 2005
Available from: 2007-08-06 Created: 2007-08-06 Last updated: 2013-03-14

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Citation style
  • apa
  • harvard1
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf