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3DPOPS: From carbohydrate sequence to 3D structure
University of Skövde, Department of Computer Science.
2002 (English)Independent thesis Advanced level (degree of Master (One Year))Student thesis
Abstract [en]

In this project a web-based system called 3DPOPS have been designed, developed and implemented. The system creates initial 3D structures of oligosaccharides according to user input data and is intended to be integrated with an automatized 3D prediction system for saccharides. The web interface uses a novel approach with a dynamically updated graphical representation of the input carbohydrate. The interface is embedded in a web page as a Java applet. Both expert and novice users needs are met by informative messages, a familiar concept and a dynamically updated graphical user interface in which only valid input can be created.

A set of test sequences was collected from the CarbBank database. An initial structure to each sequence could be created. All contained the information necessary to serve as starting points in a conformation search carried out by a 3D prediction system for carbohydrates.

Place, publisher, year, edition, pages
Skövde: Institutionen för datavetenskap , 2002. , 110 p.
Keyword [en]
3DPOPS, GUI, carbohydrate 3D structure, Java applet
National Category
Bioinformatics (Computational Biology)
Identifiers
URN: urn:nbn:se:his:diva-713OAI: oai:DiVA.org:his-713DiVA: diva2:3114
Presentation
(English)
Uppsok
Physics, Chemistry, Mathematics
Supervisors
Available from: 2008-02-04 Created: 2008-02-04 Last updated: 2009-12-02

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CiteExportLink to record
Permanent link

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Cite
Citation style
  • apa
  • harvard1
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
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