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Evaluation of search models for Molecular Replacement using MolRep
University of Skövde, Department of Computer Science.
2002 (English)Independent thesis Basic level (degree of Bachelor)Student thesis
Abstract [en]

he aim of this study is to use several homology models of different completeness and accuracy and to evaluate them as search models for Molecular Replacement (MR).Three structural groups are evaluated: α-, β- and α/β- group. From every group one template structure and a couple of search models are selected. The search models are manipulated and evaluated. B-factor manipulation, side chain removal and homology modelling are the ways the search models are manipulated. This work shows that B-factor manipulation do not improve the search models. The work also shows that removing the side chains is not improving the search models. Finally the work shows that homology modelling did not model better search models.

Place, publisher, year, edition, pages
Skövde: Institutionen för datavetenskap , 2002. , 100 p.
Keyword [en]
evaluation, manipulation, molecular replacement, search models, X-ray diffraction
National Category
Bioinformatics (Computational Biology)
Identifiers
URN: urn:nbn:se:his:diva-709OAI: oai:DiVA.org:his-709DiVA: diva2:3109
Presentation
(English)
Uppsok
Physics, Chemistry, Mathematics
Supervisors
Available from: 2008-02-04 Created: 2008-02-04 Last updated: 2009-12-11

Open Access in DiVA

fulltext(3253 kB)448 downloads
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e4271a8d72bb6c5a4a74bcd315ccc7bb5eb1335f23f3044f601552d0a9e94866261e36f5
Type fulltextMimetype application/postscript

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Bioinformatics (Computational Biology)

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CiteExportLink to record
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Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
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Language
  • de-DE
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Output format
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