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In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial control
University of Skövde, The Systems Biology Research Centre. University of Skövde, School of Life Sciences.
Department of Cell and Molecular Biology, Medicinaregatan 9C, Box 462, SE405 30 Göteborg, Sweden.
Department of Plant and Environmental Sciences, Gothenburg University, Box 461, SE405 30 Göteborg, Sweden.
Department of Plant and Environmental Sciences, Gothenburg University, Box 461, SE405 30 Göteborg, Sweden.
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2009 (English)In: Bioinformatics, ISSN 1367-4803, E-ISSN 1460-2059, Vol. 25, no 11, 1345-1348 p.Article in journal (Refereed) Published
Abstract [en]

Motivation:Cold acclimation involves a number of different cellularprocesses that together increase the freezing tolerance of anorganism. The DREB1/CBFs are transcription factors (TFs) thatare prominent in the regulation of cold responses in Arabidopsisthaliana, rice and many other crops. We investigated if theexpression of DREB1/CBFs and co-expressed genes relies on combinatorialcontrol by several TFs. Our results support this notion andindicate that methods for studying the regulation of complexcellular processes should include identification of combinationsof motifs, in addition to searching for individual overrepresentedbinding sites.

Place, publisher, year, edition, pages
Oxford University Press, 2009. Vol. 25, no 11, 1345-1348 p.
National Category
Natural Sciences
Research subject
Natural sciences
Identifiers
URN: urn:nbn:se:his:diva-3297DOI: 10.1093/bioinformatics/btp172ISI: 000266109500001PubMedID: 19321735Scopus ID: 2-s2.0-65649090169OAI: oai:DiVA.org:his-3297DiVA: diva2:227208
Available from: 2009-07-10 Created: 2009-07-10 Last updated: 2013-09-11Bibliographically approved

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