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Characterization of methylation patterns associated with lifestyle factors and vitamin D supplementation in a healthy elderly cohort from Southwest Sweden
Research School of Health and Welfare, School of Health and Welfare, University of Jönköping, Sweden.ORCID iD: 0000-0002-0045-2133
University of Skövde, School of Bioscience. University of Skövde, Systems Biology Research Environment. (Translational Bioinformatics)ORCID iD: 0000-0001-9242-4852
Department of Natural Science and Biomedicine, School of Health and Welfare, Jönköping University, Jönköping, Sweden ; Department of Clinical Physiology, County Hospital Ryhov, Jönköping, Sweden ; Unit of Cardiovascular Sciences, Department of Health, Medicine and Caring Sciences, Linköping University, Linköping, Sweden.
Department of Biology and Biology Engineering, Chalmers University of Technology, Gothenburg, Sweden.
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2022 (English)In: Scientific Reports, E-ISSN 2045-2322, Vol. 12, no 1, article id 12670Article in journal (Refereed) Published
Abstract [en]

Numerous studies have shown that lifestyle factors, such as regular physical activity and vitamin D intake, may remarkably improve overall health and mental wellbeing. This is especially important in older adults whose vitamin D deficiency occurs with a high prevalence. This study aimed to examine the influence of lifestyle and vitamin D on global DNA methylation patterns in an elderly cohort in Southwest of Sweden. We also sought to examine the methylation levels of specific genes involved in vitamin D's molecular and metabolic activated pathways. We performed a genome wide methylation analysis, using Illumina Infinium DNA Methylation EPIC 850kBeadChip array, on 277 healthy individuals from Southwest Sweden at the age of 70-95. The study participants also answered queries on lifestyle, vitamin intake, heart medication, and estimated health. Vitamin D intake did not in general affect methylation patterns, which is in concert with other studies. However, when comparing the group of individuals taking vitamin supplements, including vitamin D, with those not taking supplements, a difference in methylation in the solute carrier family 25 (SCL25A24) gene was found. This confirms a previous finding, where changes in expression of SLC25A24 were associated with vitamin D treatment in human monocytes. The combination of vitamin D intake and high physical activity increased methylation of genes linked to regulation of vitamin D receptor pathway, the Wnt pathway and general cancer processes. To our knowledge, this is the first study detecting epigenetic markers associated with the combined effects of vitamin D supplementation and high physical activity. These results deserve to be further investigated in an extended, interventional study cohort, where also the levels of 25(OH)D3 can be monitored.

Place, publisher, year, edition, pages
Nature Portfolio , 2022. Vol. 12, no 1, article id 12670
National Category
Public Health, Global Health and Social Medicine
Research subject
Bioinformatics
Identifiers
URN: urn:nbn:se:his:diva-21658DOI: 10.1038/s41598-022-15924-xISI: 000830116000026PubMedID: 35879377Scopus ID: 2-s2.0-85134761700OAI: oai:DiVA.org:his-21658DiVA, id: diva2:1685990
Funder
Swedish Research Council, 2018-05973
Note

CC BY 4.0

© 2022 Springer Nature Limited

Correspondence and requests for materials should be addressed to S.K. sandra.karlsson@ju.se

We thank the “Aktiva seniorer” association in Sweden for their collaboration in this study. The computations in this study were enabled by resources provided by the Swedish National Infrastructure for Computing (SNIC) at Uppsala Multidisciplinary Center for Advanced Computational Science (UPPMAX), partially funded by the Swedish Research Council through Grant Agreement No. 2018-05973.

Open access funding provided by Jönköping University. The University of Borås and the University of Skövde provided with funding for the different experiments performed in this study. Jönköping University supplied with the necessary resources to carry out this investigation.

Available from: 2022-08-08 Created: 2022-08-08 Last updated: 2025-04-25Bibliographically approved
In thesis
1. Exploring vitamin D and steroid hormone receptors – from healthy elderly to prostate cancer cells
Open this publication in new window or tab >>Exploring vitamin D and steroid hormone receptors – from healthy elderly to prostate cancer cells
2022 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

The genetic background together with environmental factors and lifestyle are key contributors to the health of an individual. Genetic background is inherited and irreversible unless mutations occur. However, lifestyle habits (i.e., diet, stress, physical activity, smoking, and alcohol consumption) are modifiable factors that contribute to health or disease by affecting methylation of DNA, which regulates transcription of genes.

One of the most relevant lifestyle habits for health is maintaining adequate vitamin D levels in the body as vitamin D promotes calcium and phosphate absorption, supports the nervous and immune system function, and protects bone and muscle structure. Extreme low levels of vitamin D, vitamin D deficiency, has become a global public health concern, especially in the elderly population as vitamin D deficiency can lead to several health problems such as bone fracture, decreased muscle strength, cardiovascular and autoimmune diseases, depression, and breast, pancreatic, and prostate cancer.

Prostate cancer is an uncontrolled growth of cells within the prostate gland in the male reproductive system. Human prostate carcinomas are sensitive to androgens, and hormonal ablation therapy gives a temporary remission, followed by a relapse to an androgen-insensitive state. This indicates that steroid hormones, especially androgens, play a significant role in human prostatic carcinogenesis. The molecular effect of vitamin D as a steroid hormone and which steroid hormone receptor (SHR) mediates this effect are not fully understood.

This research project aims to increase our knowledge about SHRs, primarily the vitamin D receptors, in both health and disease, focusing on genomic, epigenomic, and transcriptomic perspectives in healthy elderly individuals and prostate cancer cells.

The results from the studies in this thesis could help us understand the importance of a healthy lifestyle, which includes vitamin D for health, where we found specific methylation markers involved in the down-regulation of cancer pathways that are associated with high physical activity and vitamin D supplementation. We have further confirmed that SHRs rarely work in isolation but rather as a crosstalk at the genomic level to regulate their transcription. Hopefully, this will help clarify the modulation of transcriptional responses in SHRs and explain the development of steroid hormone-dependent cancers such as prostate cancer. Last, but not least, we revealed that genetic and transcriptional markers are associated with the putative vitamin D receptor the protein disulfide isomerase family A member 3 (PDIA3). The genetic markers were detected in a healthy elderly population under vitamin D supplementation. The transcriptional markers, PDIA3, and a novel discovered isoform of PDIA3 (PDIA3N) were related to the androgen and cancer stage of prostate cancer cells and therefore are proposed as candidate markers for clinical diagnosis of prostate cancer.

Altogether, these findings support the relevance of studying vitamin D and steroid hormone receptors, especially the PDIA3 receptor, to understand some of the factors related to healthy aging and the etiology and progression of prostate cancer.

Place, publisher, year, edition, pages
Jönköping: Jönköping University, School of Health and Welfare, 2022. p. 89
Series
Dissertation Series. School of Health and Welfare, ISSN 1654-3602 ; 111
Keywords
vitamin D, steroid hormone receptors, lifestyle, methylation, SNPs, healthy elderly, prostate cancer cells, crosstalk, PDIA3
National Category
Cancer and Oncology Bioinformatics and Computational Biology
Identifiers
urn:nbn:se:his:diva-25083 (URN)978-91-88669-10-0 (ISBN)
Public defence
2022-04-07, Forum Humanum, School of Health and Welfare, Jönköping, 13:00 (English)
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Supervisors
Note

Ett av fyra delarbeten (övriga se rubriken Delarbeten/List of papers):

Diaz Cruz MA, Ulfenborg B, Faresjö M, Ståhl F and Karlsson, S. Vitamin D supplementation is correlated with PDIA3 gene variants in an elderly healthy cohort from Southwest Sweden. Manuscript

Available from: 2025-04-25 Created: 2025-04-25 Last updated: 2025-05-27Bibliographically approved

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